The life and times of a tRNA

EM Phizicky, AK Hopper - RNA, 2023 - rnajournal.cshlp.org
The study of eukaryotic tRNA processing has given rise to an explosion of new information
and insights in the last several years. We now have unprecedented knowledge of each step …

An integrated, structure-and energy-based view of the genetic code

H Grosjean, E Westhof - Nucleic acids research, 2016 - academic.oup.com
The principles of mRNA decoding are conserved among all extant life forms. We present an
integrative view of all the interaction networks between mRNA, tRNA and rRNA: the intrinsic …

Transfer RNA modifications: nature's combinatorial chemistry playground

JE Jackman, JD Alfonzo - Wiley Interdisciplinary Reviews: RNA, 2013 - Wiley Online Library
Following synthesis, tRNAs are peppered by numerous chemical modifications which may
differentially affect a tRNA's structure and function. Although modifications affecting the …

N6-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics

J Choi, KW Ieong, H Demirci, J Chen, A Petrov… - Nature structural & …, 2016 - nature.com
N 6-methylation of adenosine (forming m6A) is the most abundant post-transcriptional
modification within the coding region of mRNA, but its role during translation remains …

The chemical diversity of RNA modifications

RJ Ontiveros, J Stoute, KF Liu - Biochemical Journal, 2019 - portlandpress.com
Nucleic acid modifications in DNA and RNA ubiquitously exist among all the three kingdoms
of life. This trait significantly broadens the genome diversity and works as an important …

Celebrating wobble decoding: Half a century and still much is new

PF Agris, ER Eruysal, A Narendran, VYP Väre… - RNA biology, 2018 - Taylor & Francis
ABSTRACT A simple post-transcriptional modification of tRNA, deamination of adenosine to
inosine at the first, or wobble, position of the anticodon, inspired Francis Crick's Wobble …

Pseudouridine: still mysterious, but never a fake (uridine)!

F Spenkuch, Y Motorin, M Helm - RNA biology, 2014 - Taylor & Francis
Pseudouridine (Ψ) is the most abundant of> 150 nucleoside modifications in RNA. Although
Ψ was discovered as the first modified nucleoside more than half a century ago, neither the …

Chemical and conformational diversity of modified nucleosides affects tRNA structure and function

VYP Väre, ER Eruysal, A Narendran, KL Sarachan… - Biomolecules, 2017 - mdpi.com
RNAs are central to all gene expression through the control of protein synthesis. Four major
nucleosides, adenosine, guanosine, cytidine and uridine, compose RNAs and provide …

Hierarchy of RNA functional dynamics

AM Mustoe, CL Brooks… - Annual review of …, 2014 - annualreviews.org
RNA dynamics play a fundamental role in many cellular functions. However, there is no
general framework to describe these complex processes, which typically consist of many …

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code

A Rozov, N Demeshkina, I Khusainov… - Nature …, 2016 - nature.com
Posttranscriptional modifications at the wobble position of transfer RNAs play a substantial
role in deciphering the degenerate genetic code on the ribosome. The number and variety of …