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Prognostic and predictive enrichment in sepsis
NL Stanski, HR Wong - Nature Reviews Nephrology, 2020 - nature.com
Sepsis is a heterogeneous disease state that is both common and consequential in critically
ill patients. Unfortunately, the heterogeneity of sepsis at the individual patient level has …
ill patients. Unfortunately, the heterogeneity of sepsis at the individual patient level has …
Studying and modelling dynamic biological processes using time-series gene expression data
Biological processes are often dynamic, thus researchers must monitor their activity at
multiple time points. The most abundant source of information regarding such dynamic …
multiple time points. The most abundant source of information regarding such dynamic …
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry
Data independent acquisition (DIA) mass spectrometry is a powerful technique that is
improving the reproducibility and throughput of proteomics studies. Here, we introduce an …
improving the reproducibility and throughput of proteomics studies. Here, we introduce an …
Ballgown bridges the gap between transcriptome assembly and expression analysis
To the Editor: Analysis of raw reads from RNA sequencing (RNA-seq) makes it possible to
reconstruct complete gene structures, including multiple splice variants, without relying on …
reconstruct complete gene structures, including multiple splice variants, without relying on …
Genomic responses in mouse models poorly mimic human inflammatory diseases
J Seok, HS Warren, AG Cuenca, MN Mindrinos… - Proceedings of the …, 2013 - pnas.org
A cornerstone of modern biomedical research is the use of mouse models to explore basic
pathophysiological mechanisms, evaluate new therapeutic approaches, and make go or no …
pathophysiological mechanisms, evaluate new therapeutic approaches, and make go or no …
Induction of pathogenic TH17 cells by inducible salt-sensing kinase SGK1
Abstract TH17 cells (interleukin-17 (IL-17)-producing helper T cells) are highly
proinflammatory cells that are critical for clearing extracellular pathogens and for inducing …
proinflammatory cells that are critical for clearing extracellular pathogens and for inducing …
Proteome-wide solubility and thermal stability profiling reveals distinct regulatory roles for ATP
S Sridharan, N Kurzawa, T Werner, I Günthner… - Nature …, 2019 - nature.com
Adenosine triphosphate (ATP) plays fundamental roles in cellular biochemistry and was
recently discovered to function as a biological hydrotrope. Here, we use mass spectrometry …
recently discovered to function as a biological hydrotrope. Here, we use mass spectrometry …
A genomic storm in critically injured humans
Human survival from injury requires an appropriate inflammatory and immune response. We
describe the circulating leukocyte transcriptome after severe trauma and burn injury, as well …
describe the circulating leukocyte transcriptome after severe trauma and burn injury, as well …
Dynamic regulatory network controlling TH17 cell differentiation
Despite their importance, the molecular circuits that control the differentiation of naive T cells
remain largely unknown. Recent studies that reconstructed regulatory networks in …
remain largely unknown. Recent studies that reconstructed regulatory networks in …
Guidelines for genome-scale analysis of biological rhythms
Genome biology approaches have made enormous contributions to our understanding of
biological rhythms, particularly in identifying outputs of the clock, including RNAs, proteins …
biological rhythms, particularly in identifying outputs of the clock, including RNAs, proteins …