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Virus taxonomy in the age of metagenomics
The number and diversity of viral sequences that are identified in metagenomic data far
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
Eukaryotic circular rep-encoding single-stranded DNA (CRESS DNA) viruses: ubiquitous viruses with small genomes and a diverse host range
While single-stranded DNA (ssDNA) was once thought to be a relatively rare genomic
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …
Discovery of several thousand highly diverse circular DNA viruses
MJ Tisza, DV Pastrana, NL Welch, B Stewart, A Peretti… - elife, 2020 - elifesciences.org
Although millions of distinct virus species likely exist, only approximately 9000 are
catalogued in GenBank's RefSeq database. We selectively enriched for the genomes of …
catalogued in GenBank's RefSeq database. We selectively enriched for the genomes of …
Reproducible protocols for metagenomic analysis of human faecal phageomes
Background Recent studies have demonstrated that the human gut is populated by complex,
highly individual and stable communities of viruses, the majority of which are …
highly individual and stable communities of viruses, the majority of which are …
[HTML][HTML] Viral diversity and potential environmental risk in microplastic at watershed scale: Evidence from metagenomic analysis of plastisphere
R Li, L Zhu, L Cui, YG Zhu - Environment international, 2022 - Elsevier
Microplastics (MPs) have been considered as a new vector for the long-distance transport of
pathogens in aquatic ecosystems. However, the composition of viral communities attached …
pathogens in aquatic ecosystems. However, the composition of viral communities attached …
Genomoviridae: a new family of widespread single-stranded DNA viruses
Here, we introduce a new family of eukaryote-infecting single-stranded (ss) DNA viruses that
was created recently by the International Committee on Taxonomy of Viruses (ICTV). The …
was created recently by the International Committee on Taxonomy of Viruses (ICTV). The …
Virome comparisons in wild-diseased and healthy captive giant pandas
W Zhang, S Yang, T Shan, R Hou, Z Liu, W Li, L Guo… - Microbiome, 2017 - Springer
Abstract Background The giant panda (Ailuropoda melanoleuca) is a vulnerable mammal
herbivore living wild in central China. Viral infections have become a potential threat to the …
herbivore living wild in central China. Viral infections have become a potential threat to the …
Family Genomoviridae: 2021 taxonomy update
Abstract The family Genomoviridae (phylum Cressdnaviricota, class Repensiviricetes, order
Geplafuvirales) includes viruses with circular single-stranded DNA genomes encoding two …
Geplafuvirales) includes viruses with circular single-stranded DNA genomes encoding two …
Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family Genomoviridae
With the advent of metagenomics approaches, a large diversity of known and unknown
viruses has been identified in various types of environmental, plant, and animal samples …
viruses has been identified in various types of environmental, plant, and animal samples …
The intestinal virome of malabsorption syndrome-affected and unaffected broilers through shotgun metagenomics
DA Lima, SP Cibulski, C Tochetto, APM Varela… - Virus research, 2019 - Elsevier
Malabsorption syndrome (MAS) is an economically important disease of young,
commercially reared broilers, characterized by growth retardation, defective feather …
commercially reared broilers, characterized by growth retardation, defective feather …