Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules …

GM Clore, J Iwahara - Chemical reviews, 2009 - ACS Publications
Understanding the function of biological macromolecules and their complexes at the
physicochemical level requires knowledge of both their structure and dynamics …

Fundamental aspects of protein− protein association kinetics

G Schreiber, G Haran, HX Zhou - Chemical reviews, 2009 - ACS Publications
The structure of a protein complex together with information about its affinity and other
thermodynamic characteristics provide a “frozen” view of the complex. This picture ignores …

Hot spots—A review of the protein–protein interface determinant amino‐acid residues

IS Moreira, PA Fernandes… - … : Structure, Function, and …, 2007 - Wiley Online Library
Proteins tendency to bind to one another in a highly specific manner forming stable
complexes is fundamental to all biological processes. A better understanding of complex …

[HTML][HTML] Electrostatic aspects of protein–protein interactions

FB Sheinerman, R Norel, B Honig - Current opinion in structural biology, 2000 - Elsevier
Structural and mutational analyses reveal a central role for electrostatic interactions in
protein–protein association. Experiment and theory both demonstrate that clusters of …

WaterLOGSY as a method for primary NMR screening: practical aspects and range of applicability

C Dalvit, GP Fogliatto, A Stewart, M Veronesi… - Journal of biomolecular …, 2001 - Springer
WaterLOGSY represents a powerful method for primary NMR screening in the identification
of compounds interacting with macromolecules, including proteins and DNA or RNA …

Close‐range electrostatic interactions in proteins

S Kumar, R Nussinov - ChemBioChem, 2002 - Wiley Online Library
Two types of noncovalent bonding interactions are present in protein structures, specific and
nonspecific. Nonspecific interactions are mostly hydrophobic and van der Waals. Specific …

Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases

M Szczepek, V Brondani, J Büchel, L Serrano… - Nature …, 2007 - nature.com
Artificial endonucleases consisting of a Fok I cleavage domain tethered to engineered zinc-
finger DNA-binding proteins have proven useful for stimulating homologous recombination …

Visualization of transient encounter complexes in protein–protein association

C Tang, J Iwahara, GM Clore - Nature, 2006 - nature.com
Kinetic data on a number of protein–protein associations have provided evidence for the
initial formation of a pre-equilibrium encounter complex that subsequently relaxes to the final …

Detecting transient intermediates in macromolecular binding by paramagnetic NMR

J Iwahara, GM Clore - Nature, 2006 - nature.com
Macromolecular complex formation is governed by two opposing constraints of specificity
and speed,. Kinetic,,, and theoretical considerations suggest that significant rate …

Kinetic studies of protein–protein interactions

G Schreiber - Current opinion in structural biology, 2002 - Elsevier
The structure of a protein–protein interaction, its affinity and thermodynamic characteristics
depict a 'frozen'state of a complex. This picture ignores the kinetic nature of complex …