Agent-based methods facilitate integrative science in cancer

J West, M Robertson-Tessi, ARA Anderson - Trends in cell biology, 2023 - cell.com
In this opinion, we highlight agent-based modeling as a key tool for exploration of cell–cell
and cell–environment interactions that drive cancer progression, therapeutic resistance, and …

Synthetic living materials in cancer biology

SR Peyton, LW Chow, SD Finley, ANF Versypt… - Nature Reviews …, 2023 - nature.com
Living materials, which are made either of or by living cells, or are synthetic materials with
programmable elements catered to cells, are environmentally responsive and can self …

[HTML][HTML] Virtual clinical trials of anti-PD-1 and anti-CTLA-4 immunotherapy in advanced hepatocellular carcinoma using a quantitative systems pharmacology model

RJ Sové, BK Verma, H Wang, WJ Ho… - … for immunotherapy of …, 2022 - ncbi.nlm.nih.gov
Background Hepatocellular carcinoma (HCC) is the most common form of primary liver
cancer and is the third-leading cause of cancer-related death worldwide. Most patients with …

The bone ecosystem facilitates multiple myeloma relapse and the evolution of heterogeneous drug resistant disease

RT Bishop, AK Miller, M Froid, N Nerlakanti, T Li… - Nature …, 2024 - nature.com
Multiple myeloma (MM) is an osteolytic malignancy that is incurable due to the emergence of
treatment resistant disease. Defining how, when and where myeloma cell intrinsic and …

Being Bayesian in the 2020s: opportunities and challenges in the practice of modern applied Bayesian statistics

JJ Bon, A Bretherton, K Buchhorn… - … of the Royal …, 2023 - royalsocietypublishing.org
Building on a strong foundation of philosophy, theory, methods and computation over the
past three decades, Bayesian approaches are now an integral part of the toolkit for most …

[HTML][HTML] Digitize your Biology! Modeling multicellular systems through interpretable cell behavior

JAI Johnson, GL Stein-O'Brien, M Booth, R Heiland… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Cells are fundamental units of life, constantly interacting and evolving as dynamical systems.
While recent spatial multi-omics can quantitate individual cells' characteristics and …

Differential Expression of SRY-Related HMG-Box Transcription Factor 2, Oligodendrocyte Lineage Transcription Factor 2, and Zinc Finger E-Box Binding Homeobox 1 …

S Patnam, B Majumder, P Joshi, AD Singh… - ACS Pharmacology & …, 2023 - ACS Publications
Glioblastoma multiforme (GBM) is the most aggressive type of glioma and is often resistant
to traditional therapies. Evidence suggests that glioma stem cells (GSCs) contribute to this …

Agent-based modeling in cancer biomedicine: applications and tools for calibration and validation

N Cogno, C Axenie, R Bauer… - Cancer Biology & …, 2024 - Taylor & Francis
Computational models are not just appealing because they can simulate and predict the
development of biological phenomena across multiple spatial and temporal scales, but also …

Modelling the spatial dynamics of oncolytic virotherapy in the presence of virus-resistant tumour cells

DK Bhatt, T Janzen, T Daemen… - PLOS Computational …, 2022 - journals.plos.org
Oncolytic virotherapy is a promising form of cancer treatment that uses native or genetically
engineered viruses to target, infect and kill cancer cells. Unfortunately, this form of therapy is …

Spatial computational modelling illuminates the role of the tumour microenvironment for treating glioblastoma with immunotherapies

B Mongeon, J Hébert-Doutreloux… - npj Systems Biology …, 2024 - nature.com
Glioblastoma is the most common and deadliest brain tumour in adults, with a median
survival of 15 months under the current standard of care. Immunotherapies like immune …