PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

D Zhang, F Gao, I Jakovlić, H Zou… - Molecular ecology …, 2020 - Wiley Online Library
Multigene and genomic data sets have become commonplace in the field of phylogenetics,
but many existing tools are not designed for such data sets, which often makes the analysis …

Mitochondrial architecture rearrangements produce asymmetrical nonadaptive mutational pressures that subvert the phylogenetic reconstruction in Isopoda

D Zhang, H Zou, CJ Hua, WX Li… - Genome biology and …, 2019 - academic.oup.com
The phylogeny of Isopoda, a speciose order of crustaceans, remains unresolved, with
different data sets (morphological, nuclear, mitochondrial) often producing starkly …

Mitochondrial genomes of two diplectanids (Platyhelminthes: Monogenea) expose paraphyly of the order Dactylogyridea and extensive tRNA gene rearrangements

D Zhang, WX Li, H Zou, SG Wu, M Li, I Jakovlić… - Parasites & …, 2018 - Springer
Background Recent mitochondrial phylogenomics studies have reported a sister-group
relationship of the orders Capsalidea and Dactylogyridea, which is inconsistent with …

Morphology is not a reliable taxonomic tool for the genus Lernaea: molecular data and experimental infection reveal that L. cyprinacea and L. cruciata are …

CJ Hua, D Zhang, H Zou, M Li, I Jakovlić, SG Wu… - Parasites & vectors, 2019 - Springer
Background Species belonging to the genus Lernaea are cosmopolitan parasites that can
infect many different freshwater fish hosts. Due to a high degree of morphological …

Three new Diplozoidae mitogenomes expose unusual compositional biases within the Monogenea class: implications for phylogenetic studies

D Zhang, H Zou, SG Wu, M Li, I Jakovlić, J Zhang… - BMC evolutionary …, 2018 - Springer
Background As the topologies produced by previous molecular and morphological studies
were contradictory and unstable (polytomy), evolutionary relationships within the …

A novel gene arrangement among the Stylommatophora by the complete mitochondrial genome of the terrestrial slug Meghimatium bilineatum (Gastropoda …

GL **e, F Köhler, XC Huang, RW Wu, CH Zhou… - Molecular Phylogenetics …, 2019 - Elsevier
Stylommatophora is a main clade of Gastropoda that encompasses approximately 112
gastropod families and may exceed a total of 30,000 species. Twenty-four complete …

Homoplasy or plesiomorphy? Reconstruction of the evolutionary history of mitochondrial gene order rearrangements in the subphylum Neodermata

D Zhang, WX Li, H Zou, SG Wu, M Li, I Jakovlić… - International Journal for …, 2019 - Elsevier
Recent mitogenomic studies have exposed a gene order (GO) shared by two classes, four
orders and 31 species ('common GO') within the flatworm subphylum Neodermata. There …

The complete mitochondrial genomes of Paradiplozoon yarkandense and Paradiplozoon homoion confirm that Diplozoidae evolve at an elevated rate

CL Hao, K Arken, M Kadir, WR Zhang, MJ Rong… - Parasites & …, 2022 - Springer
Abstract Background Diplozoidae are monogenean (Monogenea: Polyopisthocotylea) fish
parasites characterised by a unique life history: two larvae permanently fuse into an X …

Mitochondrial genomes of two Polydora (Spionidae) species provide further evidence that mitochondrial architecture in the Sedentaria (Annelida) is not conserved

L Ye, T Yao, J Lu, J Jiang, C Bai - Scientific Reports, 2021 - nature.com
Contrary to the early evidence, which indicated that the mitochondrial architecture in one of
the two major annelida clades, Sedentaria, is relatively conserved, a handful of relatively …

Characterization of the complete mitochondrial genome of Brentisentisyangtzensis Yu & Wu, 1989 (Acanthocephala, Illiosentidae)

R Song, D Zhang, JW Gao, XF Cheng, M **e, H Li… - ZooKeys, 2019 - pmc.ncbi.nlm.nih.gov
The mitogenome of Brentisentisyangtzensis is 13,864 bp in length and has the circular
structure typical of metazoans. It contains 36 genes: 22 transfer RNA genes (tRNAs), two …