AI-based language models powering drug discovery and development

Z Liu, RA Roberts, M Lal-Nag, X Chen, R Huang… - Drug Discovery …, 2021 - Elsevier
The discovery and development of new medicines is expensive, time-consuming, and often
inefficient, with many failures along the way. Powered by artificial intelligence (AI), language …

Emerging trends: A gentle introduction to fine-tuning

KW Church, Z Chen, Y Ma - Natural Language Engineering, 2021 - cambridge.org
The previous Emerging Trends article (Church et al., 2021. Natural Language
Engineering27 (5), 631–645.) introduced deep nets to poets. Poets is an imperfect …

PubTator central: automated concept annotation for biomedical full text articles

CH Wei, A Allot, R Leaman, Z Lu - Nucleic acids research, 2019 - academic.oup.com
Abstract PubTator Central (https://www. ncbi. nlm. nih. gov/research/pubtator/) is a web
service for viewing and retrieving bioconcept annotations in full text biomedical articles …

PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge

CH Wei, A Allot, PT Lai, R Leaman, S Tian… - Nucleic Acids …, 2024 - academic.oup.com
Abstract PubTator 3.0 (https://www. ncbi. nlm. nih. gov/research/pubtator3/) is a biomedical
literature resource using state-of-the-art AI techniques to offer semantic and relation …

TaggerOne: joint named entity recognition and normalization with semi-Markov Models

R Leaman, Z Lu - Bioinformatics, 2016 - academic.oup.com
Motivation: Text mining is increasingly used to manage the accelerating pace of the
biomedical literature. Many text mining applications depend on accurate named entity …

DNorm: disease name normalization with pairwise learning to rank

R Leaman, R Islamaj Doğan, Z Lu - Bioinformatics, 2013 - academic.oup.com
Motivation: Despite the central role of diseases in biomedical research, there have been
much fewer attempts to automatically determine which diseases are mentioned in a text …

Bert-based ranking for biomedical entity normalization

Z Ji, Q Wei, H Xu - AMIA Summits on Translational Science …, 2020 - pmc.ncbi.nlm.nih.gov
Develo** high-performance entity normalization algorithms that can alleviate the term
variation problem is of great interest to the biomedical community. Although deep learning …

tmChem: a high performance approach for chemical named entity recognition and normalization

R Leaman, CH Wei, Z Lu - Journal of cheminformatics, 2015 - Springer
Chemical compounds and drugs are an important class of entities in biomedical research
with great potential in a wide range of applications, including clinical medicine. Locating …