A glimpse of structural biology through X-ray crystallography

Y Shi - Cell, 2014 - cell.com
Since determination of the myoglobin structure in 1957, X-ray crystallography, as the
anchoring tool of structural biology, has played an instrumental role in deciphering the …

The structure and function of proline-rich regions in proteins

MP Williamson - Biochemical journal, 1994 - pmc.ncbi.nlm.nih.gov
Proline-rich regions (PRRs) of proteins occur widely in both prokaryotes and eukaryotes.
They are frequently found as multiple tandem repeats, often of considerable length. Despite …

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix …

JD Thompson, DG Higgins, TJ Gibson - Nucleic acids research, 1994 - academic.oup.com
The sensitivity of the commonly used progressive multiple sequence alignment method has
been greatly improved for the alignment of divergent protein sequences. Firstly, individual …

Dynamic metastable long-living droplets formed by sticker-spacer proteins

S Ranganathan, EI Shakhnovich - Elife, 2020 - elifesciences.org
Multivalent biopolymers phase separate into membrane-less organelles (MLOs) which
exhibit liquid-like behavior. Here, we explore formation of prototypical MOs from multivalent …

KiSS-1, a novel human malignant melanoma metastasis-suppressor gene

JH Lee, ME Miele, DJ Hicks, KK Phillips… - JNCI: Journal of the …, 1996 - academic.oup.com
Background Microcell-mediated transfer of chromosome 6 into human C8161 and MelJuSo
melanoma cells suppresses their ability to metastasize by at least 95% without affecting their …

Three-dimensional structure of myosin subfragment-1: a molecular motor

I Rayment, WR Rypniewski, K Schmidt-Bäse, R Smith… - Science, 1993 - science.org
Directed movement is a characteristic of many living organisms and occurs as a result of the
transformation of chemical energy into mechanical energy. Myosin is one of three families of …

Combining an elastic network with a coarse-grained molecular force field: structure, dynamics, and intermolecular recognition

X Periole, M Cavalli, SJ Marrink… - Journal of chemical …, 2009 - ACS Publications
Structure-based and physics-based coarse-grained molecular force fields have become
attractive approaches to gain mechanistic insight into the function of large biomolecular …

Protein-protein interactions: methods for detection and analysis

EM Phizicky, S Fields - Microbiological reviews, 1995 - journals.asm.org
The function and activity of a protein are often modulated by other proteins with which it
interacts. This review is intended as a practical guide to the analysis of such protein-protein …

Structure and regulation of Src family kinases

TJ Boggon, MJ Eck - Oncogene, 2004 - nature.com
Src family kinases are prototypical modular signaling proteins. Their conserved domain
organization includes a myristoylated N-terminal segment followed by SH3, SH2, and …

An evolutionary trace method defines binding surfaces common to protein families

O Lichtarge, HR Bourne, FE Cohen - Journal of molecular biology, 1996 - Elsevier
X-ray or NMR structures of proteins are often derived without their ligands, and even when
the structure of a full complex is available, the area of contact that is functionally and …