Coming of age: ten years of next-generation sequencing technologies

S Goodwin, JD McPherson, WR McCombie - Nature reviews genetics, 2016 - nature.com
Since the completion of the human genome project in 2003, extraordinary progress has
been made in genome sequencing technologies, which has led to a decreased cost per …

[HTML][HTML] Biomarkers of gastric cancer: Current topics and future perspective

T Matsuoka, M Yashiro - World journal of gastroenterology, 2018 - ncbi.nlm.nih.gov
Gastric cancer (GC) is one of the most prevalent malignant types in the world and an
aggressive disease with a poor 5-year survival. This cancer is biologically and genetically …

Polony gels enable amplifiable DNA stam** and spatial transcriptomics of chronic pain

X Fu, L Sun, R Dong, JY Chen, R Silakit, LF Condon… - Cell, 2022 - cell.com
Methods for acquiring spatially resolved omics data from complex tissues use barcoded
DNA arrays of low-to sub-micrometer features to achieve single-cell resolution. However …

Genetic landscape and biomarkers of hepatocellular carcinoma

J Zucman-Rossi, A Villanueva, JC Nault, JM Llovet - Gastroenterology, 2015 - Elsevier
Hepatocellular carcinoma (HCC) has emerged as a major cause of cancer-related death. Its
mortality has increased in Western populations, with a minority of patients diagnosed at …

Current opinion on molecular characterization for GBM classification in guiding clinical diagnosis, prognosis, and therapy

P Zhang, Q **a, L Liu, S Li, L Dong - Frontiers in molecular …, 2020 - frontiersin.org
Glioblastoma (GBM) is highly invasive and the deadliest brain tumor in adults. It is
characterized by inter-tumor and intra-tumor heterogeneity, short patient survival, and lack of …

A comprehensive transcriptional portrait of human cancer cell lines

C Klijn, S Durinck, EW Stawiski, PM Haverty… - Nature …, 2015 - nature.com
Tumor-derived cell lines have served as vital models to advance our understanding of
oncogene function and therapeutic responses. Although substantial effort has been made to …

A systematic evaluation of normalization methods in quantitative label-free proteomics

T Välikangas, T Suomi, LL Elo - Briefings in bioinformatics, 2018 - academic.oup.com
To date, mass spectrometry (MS) data remain inherently biased as a result of reasons
ranging from sample handling to differences caused by the instrumentation. Normalization is …

Cancer transcriptome profiling at the juncture of clinical translation

M Cieślik, AM Chinnaiyan - Nature Reviews Genetics, 2018 - nature.com
Methodological breakthroughs over the past four decades have repeatedly revolutionized
transcriptome profiling. Using RNA sequencing (RNA-seq), it has now become possible to …

Transcriptome profiling in human diseases: new advances and perspectives

A Casamassimi, A Federico, M Rienzo… - International journal of …, 2017 - mdpi.com
In the last decades, transcriptome profiling has been one of the most utilized approaches to
investigate human diseases at the molecular level. Through expression studies, many …

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

TR Golub, DK Slonim, P Tamayo, C Huard… - science, 1999 - science.org
Although cancer classification has improved over the past 30 years, there has been no
general approach for identifying new cancer classes (class discovery) or for assigning …