Ultraviolet photodissociation mass spectrometry for analysis of biological molecules

JS Brodbelt, LJ Morrison, I Santos - Chemical reviews, 2019 - ACS Publications
The development of new ion-activation/dissociation methods continues to be one of the most
active areas of mass spectrometry owing to the broad applications of tandem mass …

Protein analysis by shotgun/bottom-up proteomics

Y Zhang, BR Fonslow, B Shan, MC Baek… - Chemical …, 2013 - ACS Publications
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

Proteomics beyond trypsin

L Tsiatsiani, AJR Heck - The FEBS journal, 2015 - Wiley Online Library
Peptide‐centered shotgun analysis of proteins has been the core technology in mass
spectrometry based proteomics and has enabled numerous biological discoveries, such as …

The next level of complexity: crosstalk of posttranslational modifications

AS Venne, L Kollipara, RP Zahedi - Proteomics, 2014 - Wiley Online Library
Beside gene expression and translational control, which are relatively slow, PTM of proteins
represents the major level of regulation, from very fast and reversible to slow or irreversible …

Protein digestion: an overview of the available techniques and recent developments

L Switzar, M Giera, WMA Niessen - Journal of proteome research, 2013 - ACS Publications
Several proteomics approaches are available that are defined by the level (protein or
peptide) at which analysis takes place. The most widely applied method still is bottom-up …

Ion activation methods for peptides and proteins

JS Brodbelt - Analytical chemistry, 2016 - ACS Publications
The analysis of peptides and proteins as well as the grander scope of proteomics (large
scale study of proteins) has been advanced by the development of a versatile array of ion …

Exploring the reactivity of polyoxometalates toward proteins: from interactions to mechanistic insights

DE Salazar Marcano, ND Savić, SAM Abdelhameed… - JACS Au, 2023 - ACS Publications
The latest advances in the study of the reactivity of metal-oxo clusters toward proteins
showcase how fundamental insights obtained so far open new opportunities in …

Principles of electron capture and transfer dissociation mass spectrometry applied to peptide and protein structure analysis

KO Zhurov, L Fornelli, MD Wodrich… - Chemical Society …, 2013 - pubs.rsc.org
This tutorial review describes the principles and practices of electron capture and transfer
dissociation (ECD/ETD or ExD) mass spectrometry (MS) employed for peptide and protein …

Toward an optimized workflow for middle-down proteomics

A Cristobal, F Marino, H Post… - Analytical …, 2017 - ACS Publications
Mass spectrometry (MS)-based proteomics workflows can crudely be classified into two
distinct regimes, targeting either relatively small peptides (ie, 0.7 kDa< M w< 3.0 kDa) or …

The top‐down, middle‐down, and bottom‐up mass spectrometry approaches for characterization of histone variants and their post‐translational modifications

A Moradian, A Kalli, MJ Sweredoski, S Hess - Proteomics, 2014 - Wiley Online Library
Epigenetic regulation of gene expression is, at least in part, mediated by histone
modifications. PTMs of histones change chromatin structure and regulate gene transcription …