Lassa fever—the road ahead

RF Garry - Nature Reviews Microbiology, 2023 - nature.com
Lassa virus (LASV) is endemic in the rodent populations of Sierra Leone, Nigeria and other
countries in West Africa. Spillover to humans occurs frequently and results in Lassa fever, a …

Tracking virus outbreaks in the twenty-first century

ND Grubaugh, JT Ladner, P Lemey, OG Pybus… - Nature …, 2019 - nature.com
Emerging viruses have the potential to impose substantial mortality, morbidity and economic
burdens on human populations. Tracking the spread of infectious diseases to assist in their …

Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study

LW Meredith, WL Hamilton, B Warne… - The Lancet infectious …, 2020 - thelancet.com
Background The burden and influence of health-care associated severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) infections is unknown. We aimed to examine the …

Programmable inhibition and detection of RNA viruses using Cas13

CA Freije, C Myhrvold, CK Boehm, AE Lin, NL Welch… - Molecular cell, 2019 - cell.com
The CRISPR effector Cas13 could be an effective antiviral for single-stranded RNA (ssRNA)
viruses because it programmably cleaves RNAs complementary to its CRISPR RNA …

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith… - Nature protocols, 2017 - nature.com
Genome sequencing has become a powerful tool for studying emerging infectious diseases;
however, genome sequencing directly from clinical samples (ie, without isolation and …

A SARS-CoV-2 vaccine candidate would likely match all currently circulating variants

B Dearlove, E Lewitus, H Bai, Y Li, DB Reeves… - Proceedings of the …, 2020 - pnas.org
The magnitude of the COVID-19 pandemic underscores the urgency for a safe and effective
vaccine. Many vaccine candidates focus on the Spike protein, as it is targeted by …

ModelFinder: fast model selection for accurate phylogenetic estimates

S Kalyaanamoorthy, BQ Minh, TKF Wong… - Nature …, 2017 - nature.com
Abstract Model-based molecular phylogenetics plays an important role in comparisons of
genomic data, and model selection is a key step in all such analyses. We present …

Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak

LE Kafetzopoulou, ST Pullan, P Lemey, MA Suchard… - Science, 2019 - science.org
The 2018 Nigerian Lassa fever season saw the largest ever recorded upsurge of cases,
raising concerns over the emergence of a strain with increased transmission rate. To …

The evolution of Ebola virus: Insights from the 2013–2016 epidemic

EC Holmes, G Dudas, A Rambaut, KG Andersen - Nature, 2016 - nature.com
The 2013–2016 epidemic of Ebola virus disease in West Africa was of unprecedented
magnitude and changed our perspective on this lethal but sporadically emerging virus. This …

Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time

KG Barnes, AE Lachenauer, A Nitido, S Siddiqui… - Nature …, 2020 - nature.com
Recent outbreaks of viral hemorrhagic fevers (VHFs), including Ebola virus disease (EVD)
and Lassa fever (LF), highlight the urgent need for sensitive, deployable tests to diagnose …