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Population Genomics of Adaptive Radiation
Adaptive radiations are rich laboratories for exploring, testing, and understanding key
theories in evolution and ecology because they offer spectacular displays of speciation and …
theories in evolution and ecology because they offer spectacular displays of speciation and …
Characterization of fine geographic scale population genetics in sugar kelp (Saccharina latissima) using genome-wide markers
S Bråtelund, T Ruttink, F Goecke, OJ Broch… - BMC genomics, 2024 - Springer
Background Kelps are not only ecologically important, being primary producers and habitat
forming species, they also hold substantial economic potential. Expansion of the kelp …
forming species, they also hold substantial economic potential. Expansion of the kelp …
A hepatitis B virus (HBV) sequence variation graph improves alignment and sample-specific consensus sequence construction
Nearly 300 million individuals live with chronic hepatitis B virus (HBV) infection (CHB), for
which no curative therapy is available. As viral diversity is associated with pathogenesis and …
which no curative therapy is available. As viral diversity is associated with pathogenesis and …
[HTML][HTML] Museomics help resolving the phylogeny of snowfinches (Aves, Passeridae, Montifringilla and allies)
S Islam, C Peart, C Kehlmaier, YH Sun, F Lei… - Molecular Phylogenetics …, 2024 - Elsevier
Historical specimens from museum collections provide a valuable source of material also
from remote areas or regions of conflict that are not easily accessible to scientists today. With …
from remote areas or regions of conflict that are not easily accessible to scientists today. With …
[HTML][HTML] Genomic SNPs resolve the phylogeny of an ancient amphibian island radiation from the Seychelles
Unusually for oceanic islands, the granitic Seychelles host multiple lineages of endemic
amphibians. This includes an ancient (likely ca. 60 million years) radiation of eight caecilian …
amphibians. This includes an ancient (likely ca. 60 million years) radiation of eight caecilian …
Testing the classical typological taxonomy: an approach to evaluate the species hypotheses in Phloeosinus spp. (Coleoptera: Curculionidae), from the Mexican …
AN Fernández-Campos… - Insect Systematics …, 2024 - academic.oup.com
We tested the species hypotheses for 8 of the 9 Phloeosinus spp. inhabiting the Transition
Zone of Mexico based on molecular and morphological data. The morphology was analyzed …
Zone of Mexico based on molecular and morphological data. The morphology was analyzed …
Saltational Episodes of Reticulate Evolution in the Drosophila saltans Species Group
Phylogenomics reveals reticulate evolution to be widespread across taxa, but whether
reticulation is due to low statistical power or it is a true evolutionary pattern remains a field of …
reticulation is due to low statistical power or it is a true evolutionary pattern remains a field of …
PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and …
As public health laboratories expand their genomic sequencing and bioinformatics capacity
for the surveillance of different pathogens, labs must carry out robust validation, training, and …
for the surveillance of different pathogens, labs must carry out robust validation, training, and …
Approaches to studying virus pangenome variation graphs
T Downing - arxiv preprint arxiv:2412.05096, 2024 - arxiv.org
Pangenome variation graphs (PVGs) allow for the representation of genetic diversity in a
more nuanced way than traditional reference-based approaches. Here we focus on how …
more nuanced way than traditional reference-based approaches. Here we focus on how …
A hepatitis B virus (HBV) sequence variation graph improves sequence alignment and sample-specific consensus sequence construction for genetic analysis of HBV
Hepatitis B virus (HBV) remains a global public health concern, with over 250 million
individuals living with chronic HBV infection (CHB) and no curative therapy currently …
individuals living with chronic HBV infection (CHB) and no curative therapy currently …