Using haplotype information for conservation genomics

M Leitwein, M Duranton, Q Rougemont… - Trends in ecology & …, 2020 - cell.com
The particular combinations of alleles that define haplotypes along individual chromosomes
can be determined with increasing ease and accuracy by using current sequencing …

Human genetic admixture through the lens of population genomics

S Gopalan, SP Smith, K Korunes… - … of the Royal …, 2022 - royalsocietypublishing.org
Over the past 50 years, geneticists have made great strides in understanding how our
species' evolutionary history gave rise to current patterns of human genetic diversity …

MultiWaver 2.0: modeling discrete and continuous gene flow to reconstruct complex population admixtures

X Ni, K Yuan, C Liu, Q Feng, L Tian, Z Ma… - European Journal of …, 2019 - nature.com
Our goal in develo** the MultiWaver software series was to be able to infer population
admixture history under various complex scenarios. The earlier version of MultiWaver …

An extended admixture pulse model reveals the limitations to human–Neandertal introgression dating

LNM Iasi, H Ringbauer, BM Peter - Molecular Biology and …, 2021 - academic.oup.com
Abstract Neandertal DNA makes up 2–3% of the genomes of all non-African individuals. The
patterns of Neandertal ancestry in modern humans have been used to estimate that this is …

Species persistence with hybridization in toad-headed lizards driven by divergent selection and low recombination

W Gao, CX Yu, WW Zhou, BL Zhang… - Molecular Biology …, 2022 - academic.oup.com
Speciation plays a central role in evolutionary studies, and particularly how reproductive
isolation (RI) evolves. The origins and persistence of RI are distinct processes that require …

Dating admixture events is unsolved problem in multi-way admixed populations

ER Chimusa, J Defo, PK Thami, D Awany… - Briefings in …, 2020 - academic.oup.com
Advances in human sequencing technologies, coupled with statistical and computational
tools, have fostered the development of methods for dating admixture events. These …

Genetic landscape of Gullah african Americans

KD Zimmerman, TG Schurr, WM Chen… - American journal of …, 2021 - Wiley Online Library
Abstract Objectives Gullah African Americans are descendants of formerly enslaved Africans
living in the Sea Islands along the coast of the southeastern US, from North Carolina to …

Models, methods and tools for ancestry inference and admixture analysis

K Yuan, Y Zhou, X Ni, Y Wang, C Liu… - Quantitative Biology, 2017 - Wiley Online Library
Background Genetic admixture refers to the process or consequence of interbreeding
between two or more previously isolated populations within a species. Compared to many …

Modeling continuous admixture using admixture-induced linkage disequilibrium

Y Zhou, H Qiu, S Xu - Scientific reports, 2017 - nature.com
Recent migrations and inter-ethnic mating of long isolated populations have resulted in
genetically admixed populations. To understand the complex population admixture process …

Recombination, linkage and haplotypes: dissecting patterns for inheritance for genetic gain

JI Marsh, J Petereit, G Monahan… - Next-Generation …, 2022 - books.google.com
The persistence of linkage between co-inherited genetic variants over successive rounds of
recombination offers researchers and breeders a foothold into characterizing the enormous …