Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Molecular and structural antioxidant defenses against oxidative stress in animals

R Pamplona, D Costantini - American Journal of Physiology …, 2011 - journals.physiology.org
In this review, it is our aim 1) to describe the high diversity in molecular and structural
antioxidant defenses against oxidative stress in animals, 2) to extend the traditional concept …

Functional cartography of complex metabolic networks

R Guimera, LA Nunes Amaral - nature, 2005 - nature.com
High-throughput techniques are leading to an explosive growth in the size of biological
databases and creating the opportunity to revolutionize our understanding of life and …

Resolution limit in community detection

S Fortunato, M Barthelemy - Proceedings of the national …, 2007 - National Acad Sciences
Detecting community structure is fundamental for uncovering the links between structure and
function in complex networks and for practical applications in many disciplines such as …

Performance of modularity maximization in practical contexts

BH Good, YA De Montjoye, A Clauset - Physical Review E—Statistical …, 2010 - APS
Although widely used in practice, the behavior and accuracy of the popular module
identification technique called modularity maximization is not well understood in practical …

Global reconstruction of the human metabolic network based on genomic and bibliomic data

NC Duarte, SA Becker, N Jamshidi… - Proceedings of the …, 2007 - National Acad Sciences
Metabolism is a vital cellular process, and its malfunction is a major contributor to human
disease. Metabolic networks are complex and highly interconnected, and thus systems-level …

[LIBRO][B] Systems biology: properties of reconstructed networks

BØ Palsson - 2006 - books.google.com
Genome sequences are now available that enable us to determine the biological
components that make up a cell or an organism. The discipline of systems biology examines …

Modular cell biology: retroactivity and insulation

D Del Vecchio, AJ Ninfa, ED Sontag - Molecular systems biology, 2008 - embopress.org
Modularity plays a fundamental role in the prediction of the behavior of a system from the
behavior of its components, guaranteeing that the properties of individual components do …

The implications of human metabolic network topology for disease comorbidity

DS Lee, J Park, KA Kay, NA Christakis… - Proceedings of the …, 2008 - National Acad Sciences
Most diseases are the consequence of the breakdown of cellular processes, but the
relationships among genetic/epigenetic defects, the molecular interaction networks …

Modular epistasis in yeast metabolism

D Segre, A DeLuna, GM Church, R Kishony - Nature genetics, 2005 - nature.com
Epistatic interactions, manifested in the effects of mutations on the phenotypes caused by
other mutations, may help uncover the functional organization of complex biological …