Convolutional networks for supervised mining of molecular patterns within cellular context

I de Teresa-Trueba, SK Goetz, A Mattausch… - Nature …, 2023 - nature.com
Cryo-electron tomograms capture a wealth of structural information on the molecular
constituents of cells and tissues. We present DeePiCt (deep picker in context), an open …

Three-dimensional structure of kinetochore-fibers in human mitotic spindles

R Kiewisz, G Fabig, W Conway, D Baum, D Needleman… - Elife, 2022 - elifesciences.org
During cell division, kinetochore microtubules (KMTs) provide a physical linkage between
the chromosomes and the rest of the spindle. KMTs in mammalian cells are organized into …

Mitotic spindles revisited–new insights from 3D electron microscopy

T Müller-Reichert, R Kiewisz… - Journal of Cell …, 2018 - journals.biologists.com
The mitotic spindle is a complex three-dimensional (3D) apparatus that functions to ensure
the faithful segregation of chromosomes during cell division. Our current understanding of …

A switch in microtubule orientation during C. elegans meiosis

S Redemann, I Lantzsch, N Lindow, S Prohaska… - Current Biology, 2018 - cell.com
In oocytes of many organisms, meiotic spindles form in the absence of centrosomes [1–5].
Such female meiotic spindles have a pointed appearance in metaphase with microtubules …

A balance between antagonizing PAR proteins specifies the pattern of asymmetric and symmetric divisions in C. elegans embryogenesis

YW Lim, FL Wen, P Shankar, T Shibata, F Motegi - Cell Reports, 2021 - cell.com
Coordination between cell differentiation and proliferation during development requires the
balance between asymmetric and symmetric modes of cell division. However, the cellular …

A roadmap to reconstructing muscle architecture from CT data

J Katzke, P Puchenkov, H Stark… - Integrative Organismal …, 2022 - academic.oup.com
Skeletal muscle is responsible for voluntary force generation across animals, and muscle
architecture largely determines the parameters of mechanical output. The ability to analyze …

Microtubule reorganization during female meiosis in C. elegans

I Lantzsch, CH Yu, YZ Chen, V Zimyanin, H Yazdkhasti… - Elife, 2021 - elifesciences.org
Most female meiotic spindles undergo striking morphological changes while transitioning
from metaphase to anaphase. The ultra-structure of meiotic spindles, and how changes to …

Male meiotic spindle features that efficiently segregate paired and lagging chromosomes

G Fabig, R Kiewisz, N Lindow, JA Powers, V Cota… - Elife, 2020 - elifesciences.org
Chromosome segregation during male meiosis is tailored to rapidly generate multitudes of
sperm. Little is known about mechanisms that efficiently partition chromosomes to produce …

Cytoskeletal variations in an asymmetric cell division support diversity in nematode sperm size and sex ratios

ES Winter, A Schwarz, G Fabig, JL Feldman… - …, 2017 - journals.biologists.com
Asymmetric partitioning is an essential component of many developmental processes. As
spermatogenesis concludes, sperm are streamlined by discarding unnecessary cellular …

Automated segmentation of 3D cytoskeletal filaments from electron micrographs with TARDIS

R Kiewisz, G Fabig, T Müller-Reichert, T Bepler - 2023 - academic.oup.com
3D segmentation of cytoskeletal filaments and organelles is crucial for studying these
structures in cellular (cryo-) electron microscopy (EM) and tomography (ET). Manual …