A survey on molecular-scale learning systems with relevance to DNA computing

RT Nagipogu, D Fu, JH Reif - Nanoscale, 2023‏ - pubs.rsc.org
DNA computing has emerged as a promising alternative to achieve programmable
behaviors in chemistry by repurposing the nucleic acid molecules into chemical hardware …

[HTML][HTML] Synthetic biological neural networks: From current implementations to future perspectives

AH Vasle, M Moškon - BioSystems, 2024‏ - Elsevier
Artificial neural networks, inspired by the biological networks of the human brain, have
become game-changing computing models in modern computer science. Inspired by their …

Chemical reservoir computation in a self-organizing reaction network

MG Baltussen, TJ de Jong, Q Duez, WE Robinson… - Nature, 2024‏ - nature.com
Chemical reaction networks, such as those found in metabolism and signalling pathways,
enable cells to process information from their environment,. Current approaches to …

Chemical neural networks inside synthetic cells? A proposal for their realization and modeling

PL Gentili, P Stano - Frontiers in Bioengineering and Biotechnology, 2022‏ - frontiersin.org
The exciting sci-tech arena of synthetic biology (SB) provides concepts, tools, and
approaches for fundamental revolutions in basic and applied research. SB plays a key role …

[HTML][HTML] Prediction of hydrogen storage in metal-organic frameworks: a neural network based approach

S Shekhar, C Chowdhury - Results in Surfaces and Interfaces, 2024‏ - Elsevier
Gas capture, sensing, and storage systems are all within the capabilities of metal–organic
frameworks (MOFs). It is common practise to choose the MOF with the best adsorption …

Provenance of life: Chemical autonomous agents surviving through associative learning

S Bartlett, D Louapre - Physical Review E, 2022‏ - APS
We present a benchmark study of autonomous, chemical agents exhibiting associative
learning of an environmental feature. Associative learning systems have been widely …

On reaction network implementations of neural networks

DF Anderson, B Joshi… - Journal of the Royal …, 2021‏ - royalsocietypublishing.org
This paper is concerned with the utilization of deterministically modelled chemical reaction
networks for the implementation of (feed-forward) neural networks. We develop a general …

Design and simulation of a multilayer chemical neural network that learns via backpropagation

MR Lakin - Artificial Life, 2023‏ - direct.mit.edu
The design and implementation of adaptive chemical reaction networks, capable of
adjusting their behavior over time in response to experience, is a key goal for the fields of …

Reservoir computing using DNA oscillators

X Liu, KK Parhi - ACS Synthetic Biology, 2022‏ - ACS Publications
This paper presents novel implementations for reservoir computing (RC) using DNA
oscillators. An RC system consists of two parts: reservoir and readout layer. The reservoir …

A dynamical biomolecular neural network

A Moorman, CC Samaniego, C Maley… - 2019 IEEE 58th …, 2019‏ - ieeexplore.ieee.org
While much of synthetic biology was founded on the creation of reusable, standardized
parts, there is now a growing interest in synthetic networks which can compute unique …