Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation

B Bayer, J Vojvoda, P Offre, RJE Alves… - The ISME …, 2016 - academic.oup.com
Ammonia-oxidizing Archaea (AOA) are ubiquitous throughout the oceanic water column;
however, our knowledge on their physiological and ecological diversity in different oceanic …

Emerging concepts on microbial processes in the bathypelagic ocean–ecology, biogeochemistry, and genomics

T Nagata, C Tamburini, J Arístegui, F Baltar… - Deep Sea Research …, 2010 - Elsevier
This paper synthesizes recent findings regarding microbial distributions and processes in
the bathypelagic ocean (depth> 1000m). Abundance, production and respiration of …

Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean

Z Zhao, C Amano, T Reinthaler, F Baltar… - Nature …, 2024 - nature.com
Proteins in the open ocean represent a significant source of organic matter, and their profiles
reflect the metabolic activities of marine microorganisms. Here, by analyzing metaproteomic …

Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems

NA Ahlgren, Y Chen, DM Needham… - Environmental …, 2017 - Wiley Online Library
Marine Thaumarchaeota are abundant ammonia‐oxidizers but have few representative
laboratory‐cultured strains. We report the cultivation of Candidatus Nitrosomarinus catalina …

Distribution and regulation of urea in lakes of central North America

MJ Bogard, DB Donald, K Finlay… - Freshwater Biology, 2012 - Wiley Online Library
Urea accounts for∼ 50% of global nitrogen (N)‐based fertiliser; however, little is known of
the factors regulating its distribution and abundance in freshwaters. Improved understanding …

[HTML][HTML] Distribution pattern of picoplankton carbon biomass linked to mesoscale dynamics in the southern Gulf of Mexico during winter conditions

L Linacre, R Lara-Lara, V Camacho-Ibar… - Deep Sea Research …, 2015 - Elsevier
In order to characterize the carbon biomass spatial distribution of autotrophic and
heterotrophic picoplankton populations linked to mesoscale dynamics, an investigation over …

Differential effects of nitrate, ammonium, and urea as N sources for microbial communities in the North Pacific Ocean

IN Shilova, MM Mills, JC Robidart… - Limnology and …, 2017 - Wiley Online Library
Nitrogen (N) is the major limiting nutrient for phytoplankton growth and productivity in large
parts of the world's oceans. Differential preferences for specific N substrates may be …

Light exposure enhances urea absorption in the fluted giant clam, Tridacna squamosa, and up-regulates the protein abundance of a light-dependent urea active …

CYL Chan, KC Hiong, MV Boo… - Journal of …, 2018 - journals.biologists.com
Giant clams live in nutrient-poor reef waters of the Indo-Pacific and rely on symbiotic
dinoflagellates (Symbiodinium spp., also known as zooxanthellae) for nutrients. As the …

Optimization of a colorimetric method to determine trace urea in seawater

L Chen, J Ma, Y Huang, M Dai… - Limnology and …, 2015 - Wiley Online Library
This study optimized the experimental conditions for the analysis of dissolved urea in
seawater. The kinetics of the colorimetric reaction of urea with diacetyl monoxime were …

Coupled effect of substrate and light on assimilation and oxidation of regenerated nitrogen in the euphotic ocean

MN Xu, X Li, D Shi, Y Zhang, M Dai… - Limnology and …, 2019 - Wiley Online Library
Nitrogen (N), as a critical element for microbial metabolisms, recycles rapidly in the euphotic
ocean. Oxidation by nitrifiers is a competing pathway for phytoplankton assimilation of …