Computational approaches for detecting protein complexes from protein interaction networks: a survey
Background Most proteins form macromolecular complexes to perform their biological
functions. However, experimentally determined protein complex data, especially of those …
functions. However, experimentally determined protein complex data, especially of those …
A survey of computational intelligence techniques in protein function prediction
AK Tiwari, R Srivastava - International journal of proteomics, 2014 - Wiley Online Library
During the past, there was a massive growth of knowledge of unknown proteins with the
advancement of high throughput microarray technologies. Protein function prediction is the …
advancement of high throughput microarray technologies. Protein function prediction is the …
DeepFunc: a deep learning framework for accurate prediction of protein functions from protein sequences and interactions
Annotation of protein functions plays an important role in understanding life at the molecular
level. High‐throughput sequencing produces massive numbers of raw proteins sequences …
level. High‐throughput sequencing produces massive numbers of raw proteins sequences …
Phenotypic Analyses of Arabidopsis T-DNA Insertion Lines and Expression Profiling Reveal That Multiple L-Type Lectin Receptor Kinases Are Involved in Plant …
Y Wang, K Bouwmeester, P Beseh… - Molecular Plant …, 2014 - Am Phytopath Society
L-type lectin receptor kinases (LecRK) are membrane-spanning receptor-like kinases with
putative roles in biotic and abiotic stress responses and in plant development. In …
putative roles in biotic and abiotic stress responses and in plant development. In …
Detecting temporal protein complexes from dynamic protein-protein interaction networks
Background Proteins dynamically interact with each other to perform their biological
functions. The dynamic operations of protein interaction networks (PPI) are also reflected in …
functions. The dynamic operations of protein interaction networks (PPI) are also reflected in …
Si-CSP9 regulates the integument and moulting process of larvae in the red imported fire ant, Solenopsis invicta
D Cheng, Y Lu, L Zeng, G Liang, X He - Scientific Reports, 2015 - nature.com
Chemosensory proteins (CSPs) have been predicted to be involved in development;
however, direct evidence for their involvement is lacking and genetic basis is largely …
however, direct evidence for their involvement is lacking and genetic basis is largely …
Nonnegative principal component analysis for cancer molecular pattern discovery
X Han - IEEE/ACM Transactions on Computational Biology and …, 2009 - ieeexplore.ieee.org
As a well-established feature selection algorithm, principal component analysis (PCA) is
often combined with the state-of-the-art classification algorithms to identify cancer molecular …
often combined with the state-of-the-art classification algorithms to identify cancer molecular …
A new unsupervised gene clustering algorithm based on the integration of biological knowledge into expression data
M Verbanck, S Lê, J Pagès - BMC bioinformatics, 2013 - Springer
Background Gene clustering algorithms are massively used by biologists when analysing
omics data. Classical gene clustering strategies are based on the use of expression data …
omics data. Classical gene clustering strategies are based on the use of expression data …
Reconstruction of the protein-protein interaction network for protein complexes identification by walking on the protein pair fingerprints similarity network
Identifying protein complexes from protein-protein interaction networks (PPINs) is important
to understand the science of cellular organization and function. However, PPINs produced …
to understand the science of cellular organization and function. However, PPINs produced …
The impact of protein interaction networks' characteristics on computational complex detection methods
Protein complexes of physically interacting proteins play an important role in organizing
various biological processes in the cell. Therefore, correctly identifying complexes is useful …
various biological processes in the cell. Therefore, correctly identifying complexes is useful …