How water's properties are encoded in its molecular structure and energies

E Brini, CJ Fennell, M Fernandez-Serra… - Chemical …, 2017 - ACS Publications
How are water's material properties encoded within the structure of the water molecule? This
is pertinent to understanding Earth's living systems, its materials, its geochemistry and …

Quantum mechanical continuum solvation models

J Tomasi, B Mennucci, R Cammi - Chemical reviews, 2005 - ACS Publications
This review on continuum solvation models has been preceded in Chemical Reviews by
others addressing the same subject. They are due to Tomasi and Persico1 (published in …

[PDF][PDF] Amber 10

DA Case, TA Darden, TE Cheatham, CL Simmerling… - 2008 - infoscience.epfl.ch
Amber is the collective name for a suite of programs that allow users to carry out molecular
dynamics simulations, particularly on biomolecules. None of the individual programs carries …

Recent advances in wave function-based methods of molecular-property calculations

T Helgaker, S Coriani, P Jørgensen… - Chemical …, 2012 - ACS Publications
Our understanding of the electronic structure of molecules often comes from spectroscopic
investigations in which electromagnetic radiation is applied to a molecule and the scattering …

Finite representation of an infinite bulk system: Solvent boundary potential for computer simulations

D Beglov, B Roux - The Journal of chemical physics, 1994 - pubs.aip.org
An approach is developed to obtain statistical properties similar to those of an infinite bulk
system from computer simulations of a finite cluster. A rigorous theoretical formulation is …

[Књига][B] Theory of Molecular Fluids: Volume 2: Applications

CG Gray, KE Gubbins, CG Joslin - 2011 - books.google.com
Existing texts on the statistical mechanics of liquids treat only spherical molecules. However,
nearly all fluids of practical interest are composed of non-spherical molecules that are often …

Hydrophobic effects. Opinions and facts

W Blokzijl, JBFN Engberts - Angewandte Chemie International …, 1993 - Wiley Online Library
The term hydrophobic interactions denotes the tendency of relatively apolar molecules to
stick together in aqueous solution. These interactions are of importance in many chemical …

Implicit solvent models

B Roux, T Simonson - Biophysical chemistry, 1999 - Elsevier
Implicit solvent models for biomolecular simulations are reviewed and their underlying
statistical mechanical basis is discussed. The fundamental quantity that implicit models seek …

[PDF][PDF] Free energy via molecular simulation: applications to chemical and biomolecular systems

DL Beveridge, FM Dicapua - Annual review of biophysics and …, 1989 - stat.duke.edu
The complement of molecular theory and experiment in gaining new knowledge and solving
research problems in the biological sciences has been considerably enhanced by the …

Self-consistent description of a metal–water interface by the Kohn–Sham density functional theory and the three-dimensional reference interaction site model

A Kovalenko, F Hirata - The Journal of chemical physics, 1999 - pubs.aip.org
We have developed a self-consistent description of an interface between a metal and a
molecular liquid by combination of the density functional theory in the Kohn–Sham …