Glycoproteomics

I Bagdonaite, SA Malaker, DA Polasky… - Nature Reviews …, 2022 - nature.com
Protein glycosylation involves the co-translational or post-translational addition of glycans to
proteins and is a crucial protein modification in health and disease. The aim of …

Analytical and biochemical perspectives of protein O-GlcNAcylation

J Ma, C Wu, GW Hart - Chemical Reviews, 2021 - ACS Publications
Protein O-linked β-N-acetylglucosamine (O-GlcNAc) modification (O-GlcNAcylation) is a
unique monosaccharide modification discovered in the early 1980s. With the technological …

Optimal Dissociation Methods Differ for N- and O-Glycopeptides

NM Riley, SA Malaker, MD Driessen… - Journal of proteome …, 2020 - ACS Publications
Site-specific characterization of glycosylation requires intact glycopeptide analysis, and
recent efforts have focused on how to best interrogate glycopeptides using tandem mass …

The mucin-selective protease StcE enables molecular and functional analysis of human cancer-associated mucins

SA Malaker, K Pedram, MJ Ferracane… - Proceedings of the …, 2019 - National Acad Sciences
Mucin domains are densely O-glycosylated modular protein domains that are found in a
wide variety of cell surface and secreted proteins. Mucin-domain glycoproteins are known to …

Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis

NM Riley, AS Hebert, MS Westphall, JJ Coon - Nature communications, 2019 - nature.com
Protein glycosylation is a highly important, yet poorly understood protein post-translational
modification. Thousands of possible glycan structures and compositions create potential for …

Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics

MEH White, LR Sinn, DM Jones, J de Folter… - Nature Biomedical …, 2024 - nature.com
Protein glycosylation, a complex and heterogeneous post-translational modification that is
frequently dysregulated in disease, has been difficult to analyse at scale. Here we report a …

Predicting glycan structure from tandem mass spectrometry via deep learning

J Urban, C **, KA Thomsson, NG Karlsson, CM Ives… - Nature …, 2024 - nature.com
Glycans constitute the most complicated post-translational modification, modulating protein
activity in health and disease. However, structural annotation from tandem mass …

Maturing glycoproteomics technologies provide unique structural insights into the N-glycoproteome and its regulation in health and disease

M Thaysen-Andersen, NH Packer, BL Schulz - Molecular & Cellular …, 2016 - ASBMB
The glycoproteome remains severely understudied because of significant analytical
challenges associated with glycoproteomics, the system-wide analysis of intact …

The benefits of hybrid fragmentation methods for glycoproteomics

KR Reiding, A Bondt, V Franc, AJR Heck - TrAC Trends in Analytical …, 2018 - Elsevier
Glycosylation is an important and variable protein modification that can have a profound
effect on the physiological characteristics of the substrate, warranting careful examination in …

NIST interlaboratory study on glycosylation analysis of monoclonal antibodies: comparison of results from diverse analytical methods

MLA De Leoz, DL Duewer, A Fung, L Liu… - Molecular & Cellular …, 2020 - ASBMB
Glycosylation is a topic of intense current interest in the development of biopharmaceuticals
because it is related to drug safety and efficacy. This work describes results of an …