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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Background The process of generating raw genome sequence data continues to become
cheaper, faster, and more accurate. However, assembly of such data into high-quality …
cheaper, faster, and more accurate. However, assembly of such data into high-quality …
A survey of emerging patterns for supervised classification
Obtaining accurate class prediction of a query object is an important component of
supervised classification. However, it could be also important to understand the …
supervised classification. However, it could be also important to understand the …
Integrative biomarker detection on high-dimensional gene expression data sets: a survey on prior knowledge approaches
C Perscheid - Briefings in bioinformatics, 2021 - academic.oup.com
Gene expression data provide the expression levels of tens of thousands of genes from
several hundred samples. These data are analyzed to detect biomarkers that can be of …
several hundred samples. These data are analyzed to detect biomarkers that can be of …
Integrative gene selection on gene expression data: providing biological context to traditional approaches
C Perscheid, B Grasnick, M Uflacker - Journal of Integrative …, 2019 - degruyter.com
The advance of high-throughput RNA-Sequencing techniques enables researchers to
analyze the complete gene activity in particular cells. From the insights of such analyses …
analyze the complete gene activity in particular cells. From the insights of such analyses …
Mining gene expression data focusing cancer therapeutics: a digest
An understanding towards genetics and epigenetics is essential to cope up with the
paradigm shift which is underway. Personalized medicine and gene therapy will confluence …
paradigm shift which is underway. Personalized medicine and gene therapy will confluence …
Biologically weighted LASSO: enhancing functional interpretability in gene expression data analysis
Motivation Feature selection approaches are widely used in gene expression data analysis
to identify the most relevant features and boost performance in regression and classification …
to identify the most relevant features and boost performance in regression and classification …
Integrating biological context into the analysis of gene expression data
C Perscheid, M Uflacker - … and Artificial Intelligence, Special Sessions, 15th …, 2019 - Springer
High-throughput RNA sequencing produces large gene expression datasets whose analysis
leads to a better understanding of diseases like cancer. The nature of RNA-Seq data poses …
leads to a better understanding of diseases like cancer. The nature of RNA-Seq data poses …
An experimental study on microarray expression data from plants under salt stress by using clustering methods
Current Genome-wide advancements in Gene chips technology provide in the “Omics
(genomics, proteomics and transcriptomics) research”, an opportunity to analyze the …
(genomics, proteomics and transcriptomics) research”, an opportunity to analyze the …
Comprior: facilitating the implementation and automated benchmarking of prior knowledge-based feature selection approaches on gene expression data sets
C Perscheid - BMC bioinformatics, 2021 - Springer
Background Reproducible benchmarking is important for assessing the effectiveness of
novel feature selection approaches applied on gene expression data, especially for prior …
novel feature selection approaches applied on gene expression data, especially for prior …
Cancer detection using frequency pattern ant colony optimization
R Shukla, D Motwani - International Journal of Engineering …, 2014 - rjwave.org
Over the past few decades, to computerized diagnostic tools, intended to aid expert in
making sense out of the welter of data. Due to improvements in biometric instrumentation …
making sense out of the welter of data. Due to improvements in biometric instrumentation …