Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

KR Bradnam, JN Fass, A Alexandrov, P Baranay… - …, 2013 - academic.oup.com
Background The process of generating raw genome sequence data continues to become
cheaper, faster, and more accurate. However, assembly of such data into high-quality …

A survey of emerging patterns for supervised classification

M García-Borroto, JF Martínez-Trinidad… - Artificial Intelligence …, 2014 - Springer
Obtaining accurate class prediction of a query object is an important component of
supervised classification. However, it could be also important to understand the …

Integrative biomarker detection on high-dimensional gene expression data sets: a survey on prior knowledge approaches

C Perscheid - Briefings in bioinformatics, 2021 - academic.oup.com
Gene expression data provide the expression levels of tens of thousands of genes from
several hundred samples. These data are analyzed to detect biomarkers that can be of …

Integrative gene selection on gene expression data: providing biological context to traditional approaches

C Perscheid, B Grasnick, M Uflacker - Journal of Integrative …, 2019 - degruyter.com
The advance of high-throughput RNA-Sequencing techniques enables researchers to
analyze the complete gene activity in particular cells. From the insights of such analyses …

Mining gene expression data focusing cancer therapeutics: a digest

S Jauhari, SAM Rizvi - IEEE/ACM Transactions on …, 2014 - ieeexplore.ieee.org
An understanding towards genetics and epigenetics is essential to cope up with the
paradigm shift which is underway. Personalized medicine and gene therapy will confluence …

Biologically weighted LASSO: enhancing functional interpretability in gene expression data analysis

S Mongardi, S Cascianelli, M Masseroli - Bioinformatics, 2024 - academic.oup.com
Motivation Feature selection approaches are widely used in gene expression data analysis
to identify the most relevant features and boost performance in regression and classification …

Integrating biological context into the analysis of gene expression data

C Perscheid, M Uflacker - … and Artificial Intelligence, Special Sessions, 15th …, 2019 - Springer
High-throughput RNA sequencing produces large gene expression datasets whose analysis
leads to a better understanding of diseases like cancer. The nature of RNA-Seq data poses …

Comprior: facilitating the implementation and automated benchmarking of prior knowledge-based feature selection approaches on gene expression data sets

C Perscheid - BMC bioinformatics, 2021 - Springer
Background Reproducible benchmarking is important for assessing the effectiveness of
novel feature selection approaches applied on gene expression data, especially for prior …

Cancer detection using frequency pattern ant colony optimization

R Shukla, D Motwani - International Journal of Engineering …, 2014 - rjwave.org
Over the past few decades, to computerized diagnostic tools, intended to aid expert in
making sense out of the welter of data. Due to improvements in biometric instrumentation …