Using PyMOL as a platform for computational drug design

S Yuan, HCS Chan, Z Hu - Wiley Interdisciplinary Reviews …, 2017 - Wiley Online Library
PyMOL, a cross‐platform molecular graphics tool, has been widely used for three‐
dimensional (3D) visualization of proteins, nucleic acids, small molecules, electron …

Artificial intelligence, big data and machine learning approaches in precision medicine & drug discovery

A Nayarisseri, R Khandelwal, P Tanwar… - Current drug …, 2021 - ingentaconnect.com
Artificial Intelligence revolutionizes the drug development process that can quickly identify
potential biologically active compounds from millions of candidate within a short period. The …

DrugRep: an automatic virtual screening server for drug repurposing

J Gan, J Liu, Y Liu, S Chen, W Dai, ZX **ao… - Acta Pharmacologica …, 2023 - nature.com
Computationally identifying new targets for existing drugs has drawn much attention in drug
repurposing due to its advantages over de novo drugs, including low risk, low costs, and …

An overview of molecular fingerprint similarity search in virtual screening

I Muegge, P Mukherjee - Expert opinion on drug discovery, 2016 - Taylor & Francis
Introduction: A central premise of medicinal chemistry is that structurally similar molecules
exhibit similar biological activities. Molecular fingerprints encode properties of small …

A comprehensive review of cholinesterase modeling and simulation

D De Boer, N Nguyen, J Mao, J Moore, EJ Sorin - Biomolecules, 2021 - mdpi.com
The present article reviews published efforts to study acetylcholinesterase and
butyrylcholinesterase structure and function using computer-based modeling and simulation …

Structure-based design of selective, orally available salt-inducible kinase inhibitors that stimulate bone formation in mice

T Sato, CDC Andrade, SH Yoon, Y Zhao… - Proceedings of the …, 2022 - pnas.org
Osteoporosis is a major public health problem. Currently, there are no orally available
therapies that increase bone formation. Intermittent parathyroid hormone (PTH) stimulates …

A mechanistic investigation on kokumi-active γ-Glutamyl tripeptides–A computational study to understand molecular basis of their activity and to identify novel potential …

L Dellafiora, F Magnaghi, G Galaverna… - Food Research …, 2022 - Elsevier
Kokumi is an important taste perception whose chemical basis still needs clarifications and
for which the development of high-throughput tools of analysis is desirable. The activation of …

ProBiS-Dock Database: a web server and interactive web repository of small ligand–protein binding sites for drug design

J Konc, S Lesnik, B Skrlj, D Janezic - Journal of chemical …, 2021 - ACS Publications
We have developed a new system, ProBiS-Dock, which can be used to determine the
different types of protein binding sites for small ligands. The binding sites identified this way …