Directed evolution: methodologies and applications

Y Wang, P Xue, M Cao, T Yu, ST Lane… - Chemical reviews, 2021 - ACS Publications
Directed evolution aims to expedite the natural evolution process of biological molecules
and systems in a test tube through iterative rounds of gene diversifications and library …

Metabolic engineering: methodologies and applications

MJ Volk, VG Tran, SI Tan, S Mishra, Z Fatma… - Chemical …, 2022 - ACS Publications
Metabolic engineering aims to improve the production of economically valuable molecules
through the genetic manipulation of microbial metabolism. While the discipline is a little over …

Multiplexed CRISPR technologies for gene editing and transcriptional regulation

NS McCarty, AE Graham, L Studená… - Nature …, 2020 - nature.com
Multiplexed CRISPR technologies, in which numerous gRNAs or Cas enzymes are
expressed at once, have facilitated powerful biological engineering applications, vastly …

Molecular recording of mammalian embryogenesis

MM Chan, ZD Smith, S Grosswendt, H Kretzmer… - Nature, 2019 - nature.com
Ontogeny describes the emergence of complex multicellular organisms from single
totipotent cells. This field is particularly challenging in mammals, owing to the indeterminate …

A highly characterized yeast toolkit for modular, multipart assembly

ME Lee, WC DeLoache, B Cervantes… - ACS synthetic …, 2015 - ACS Publications
Saccharomyces cerevisiae is an increasingly attractive host for synthetic biology because of
its long history in industrial fermentations. However, until recently, most synthetic biology …

Recent advances in metabolic engineering of Saccharomyces cerevisiae: new tools and their applications

J Lian, S Mishra, H Zhao - Metabolic engineering, 2018 - Elsevier
Metabolic engineering aims to develop efficient cell factories by rewiring cellular
metabolism. As one of the most commonly used cell factories, Saccharomyces cerevisiae …

A gRNA-tRNA array for CRISPR-Cas9 based rapid multiplexed genome editing in Saccharomyces cerevisiae

Y Zhang, J Wang, Z Wang, Y Zhang, S Shi… - Nature …, 2019 - nature.com
With rapid progress in DNA synthesis and sequencing, strain engineering starts to be the
rate-limiting step in synthetic biology. Here, we report a gRNA-tRNA array for CRISPR-Cas9 …

Genome-wide map** of mutations at single-nucleotide resolution for protein, metabolic and genome engineering

AD Garst, MC Bassalo, G Pines, SA Lynch… - Nature …, 2017 - nature.com
Improvements in DNA synthesis and sequencing have underpinned comprehensive
assessment of gene function in bacteria and eukaryotes. Genome-wide analyses require …

Combinatorial metabolic engineering using an orthogonal tri-functional CRISPR system

J Lian, M HamediRad, S Hu, H Zhao - Nature communications, 2017 - nature.com
Designing an optimal microbial cell factory often requires overexpression, knock-down, and
knock-out of multiple gene targets. Unfortunately, such rewiring of cellular metabolism is …

High-Efficiency Multiplex Genome Editing of Streptomyces Species Using an Engineered CRISPR/Cas System

RE Cobb, Y Wang, H Zhao - ACS synthetic biology, 2015 - ACS Publications
Actinobacteria, particularly those of genus Streptomyces, remain invaluable hosts for the
discovery and engineering of natural products and their cognate biosynthetic pathways …