[HTML][HTML] DeconvolutionLab2: An open-source software for deconvolution microscopy

D Sage, L Donati, F Soulez, D Fortun, G Schmit, A Seitz… - Methods, 2017 - Elsevier
Images in fluorescence microscopy are inherently blurred due to the limit of diffraction of
light. The purpose of deconvolution microscopy is to compensate numerically for this …

Inverse problems: From regularization to Bayesian inference

D Calvetti, E Somersalo - Wiley Interdisciplinary Reviews …, 2018 - Wiley Online Library
Inverse problems deal with the quest for unknown causes of observed consequences,
based on predictive models, known as the forward models, that associate the former …

A descent lemma beyond Lipschitz gradient continuity: first-order methods revisited and applications

HH Bauschke, J Bolte… - Mathematics of Operations …, 2017 - pubsonline.informs.org
The proximal gradient and its variants is one of the most attractive first-order algorithm for
minimizing the sum of two convex functions, with one being nonsmooth. However, it requires …

The 2015 super-resolution microscopy roadmap

SW Hell, SJ Sahl, M Bates, X Zhuang… - Journal of Physics D …, 2015 - iopscience.iop.org
Far-field optical microscopy using focused light is an important tool in a number of scientific
disciplines including chemical,(bio) physical and biomedical research, particularly with …

A robust and versatile platform for image scanning microscopy enabling super-resolution FLIM

M Castello, G Tortarolo, M Buttafava, T Deguchi… - Nature …, 2019 - nature.com
Image scanning microscopy (ISM) can improve the effective spatial resolution of confocal
microscopy to its theoretical limit. However, current implementations are not robust or …

Wave optics theory and 3-D deconvolution for the light field microscope

M Broxton, L Grosenick, S Yang, N Cohen… - Optics express, 2013 - opg.optica.org
Light field microscopy is a new technique for high-speed volumetric imaging of weakly
scattering or fluorescent specimens. It employs an array of microlenses to trade off spatial …

Fourier ring correlation simplifies image restoration in fluorescence microscopy

S Koho, G Tortarolo, M Castello, T Deguchi… - Nature …, 2019 - nature.com
Fourier ring correlation (FRC) has recently gained popularity among fluorescence
microscopists as a straightforward and objective method to measure the effective image …

Optimal complexity and certification of Bregman first-order methods

RA Dragomir, AB Taylor, A d'Aspremont… - Mathematical …, 2022 - Springer
We provide a lower bound showing that the O (1/k) convergence rate of the NoLips method
(aka Bregman Gradient or Mirror Descent) is optimal for the class of problems satisfying the …

STED nanoscopy with time-gated detection: theoretical and experimental aspects

G Vicidomini, A Schönle, H Ta, KY Han, G Moneron… - PloS one, 2013 - journals.plos.org
In a stimulated emission depletion (STED) microscope the region in which fluorescence
markers can emit spontaneously shrinks with continued STED beam action after a singular …

Fast stochastic bregman gradient methods: Sharp analysis and variance reduction

RA Dragomir, M Even… - … Conference on Machine …, 2021 - proceedings.mlr.press
We study the problem of minimizing a relatively-smooth convex function using stochastic
Bregman gradient methods. We first prove the convergence of Bregman Stochastic Gradient …