An updated classification of cyanobacterial orders and families based on phylogenomic and polyphasic analysis
O Strunecký, AP Ivanova, J Mareš - Journal of Phycology, 2023 - Wiley Online Library
Cyanobacterial taxonomy is facing a period of rapid changes thanks to the ease of 16S
rRNA gene sequencing and established workflows for description of new taxa. Since the last …
rRNA gene sequencing and established workflows for description of new taxa. Since the last …
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
COG database update: focus on microbial diversity, model organisms, and widespread pathogens
Abstract The Clusters of Orthologous Genes (COG) database, also referred to as the
Clusters of Orthologous Groups of proteins, was created in 1997 and went through several …
Clusters of Orthologous Groups of proteins, was created in 1997 and went through several …
A unified catalog of 204,938 reference genomes from the human gut microbiome
Comprehensive, high-quality reference genomes are required for functional characterization
and taxonomic assignment of the human gut microbiota. We present the Unified Human …
and taxonomic assignment of the human gut microbiota. We present the Unified Human …
Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major …
The class Deltaproteobacteria comprises an ecologically and metabolically diverse group of
bacteria best known for dissimilatory sulphate reduction and predatory behaviour. Although …
bacteria best known for dissimilatory sulphate reduction and predatory behaviour. Although …
New insights from uncultivated genomes of the global human gut microbiome
The genome sequences of many species of the human gut microbiome remain unknown,
largely owing to challenges in cultivating microorganisms under laboratory conditions. Here …
largely owing to challenges in cultivating microorganisms under laboratory conditions. Here …
[HTML][HTML] Cyanobacteria and biogeochemical cycles through Earth history
Cyanobacteria are the only prokaryotes to have evolved oxygenic photosynthesis,
transforming the biology and chemistry of our planet. Genomic and evolutionary studies …
transforming the biology and chemistry of our planet. Genomic and evolutionary studies …
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
Microbial communities are critical to ecosystem function. A key objective of metagenomic
studies is to analyse organism-specific metabolic pathways and reconstruct community …
studies is to analyse organism-specific metabolic pathways and reconstruct community …
Major new microbial groups expand diversity and alter our understanding of the tree of life
The recent recovery of genomes for organisms from phyla with no isolated representative
(candidate phyla) via cultivation-independent genomics enabled delineation of major new …
(candidate phyla) via cultivation-independent genomics enabled delineation of major new …
The nasal and gut microbiome in Parkinson's disease and idiopathic rapid eye movement sleep behavior disorder
A Heintz‐Buschart, U Pandey, T Wicke… - Movement …, 2018 - Wiley Online Library
Background Increasing evidence connects the gut microbiota and the onset and/or
phenotype of Parkinson's disease (PD). Differences in the abundances of specific bacterial …
phenotype of Parkinson's disease (PD). Differences in the abundances of specific bacterial …