Sex and the TEs: transposable elements in sexual development and function in animals

C Dechaud, JN Volff, M Schartl, M Naville - Mobile DNA, 2019 - Springer
Transposable elements are endogenous DNA sequences able to integrate into and multiply
within genomes. They constitute a major source of genetic innovations, as they can not only …

A new portrait of constitutive heterochromatin: lessons from Drosophila melanogaster

RM Marsano, E Giordano, G Messina, P Dimitri - Trends in Genetics, 2019 - cell.com
Constitutive heterochromatin represents a significant portion of eukaryotic genomes, but its
functions still need to be elucidated. Even in the most updated genetics and molecular …

Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Drosophila melanogaster Y Chromosome

CH Chang, AM Larracuente - Genetics, 2019 - academic.oup.com
Heterochromatic repeat-rich regions are often missing from even the best genome
assemblies. Chang and Larracuente designed a de novo assembly strategy to improve the …

Evolution of genome structure in the Drosophila simulans species complex

M Chakraborty, CH Chang, DE Khost… - Genome …, 2021 - genome.cshlp.org
The rapid evolution of repetitive DNA sequences, including satellite DNA, tandem
duplications, and transposable elements, underlies phenotypic evolution and contributes to …

piRNA-mediated gene regulation and adaptation to sex-specific transposon expression in D. melanogaster male germline

P Chen, AA Kotov, BK Godneeva… - Genes & …, 2021 - genesdev.cshlp.org
Small noncoding piRNAs act as sequence-specific guides to repress complementary targets
in Metazoa. Prior studies in Drosophila ovaries have demonstrated the function of the piRNA …

Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes

AB Hall, PA Papathanos, A Sharma… - Proceedings of the …, 2016 - National Acad Sciences
Y chromosomes control essential male functions in many species, including sex
determination and fertility. However, because of obstacles posed by repeat-rich …

Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci in Drosophila melanogaster

DE Khost, DG Eickbush, AM Larracuente - Genome research, 2017 - genome.cshlp.org
Highly repetitive satellite DNA (satDNA) repeats are found in most eukaryotic genomes.
SatDNAs are rapidly evolving and have roles in genome stability and chromosome …

Unique structure and positive selection promote the rapid divergence of Drosophila Y chromosomes

CH Chang, LE Gregory, KE Gordon, CD Meiklejohn… - Elife, 2022 - elifesciences.org
Y chromosomes across diverse species convergently evolve a gene-poor, heterochromatic
organization enriched for duplicated genes, LTR retrotransposons, and satellite DNA …

dCas9-targeted locus-specific protein isolation method identifies histone gene regulators

C Tsui, C Inouye, M Levy, A Lu… - Proceedings of the …, 2018 - National Acad Sciences
Eukaryotic gene regulation is a complex process, often coordinated by the action of tens to
hundreds of proteins. Although previous biochemical studies have identified many …

Extreme Y chromosome polymorphism corresponds to five male reproductive morphs of a freshwater fish

BA Sandkam, P Almeida, I Darolti… - Nature Ecology & …, 2021 - nature.com
Loss of recombination between sex chromosomes often depletes Y chromosomes of
functional content and genetic variation, which might limit their potential to generate …