Metal sensing by DNA

W Zhou, R Saran, J Liu - Chemical reviews, 2017 - ACS Publications
Metal ions are essential to many chemical, biological, and environmental processes. In the
past two decades, many DNA-based metal sensors have emerged. While the main …

How RNA folds

I Tinoco Jr, C Bustamante - Journal of molecular biology, 1999 - Elsevier
We describe the RNA folding problem and contrast it with the much more difficult protein
folding problem. RNA has four similar monomer units, whereas proteins have 20 very …

Cryo-EM structures of full-length Tetrahymena ribozyme at 3.1 Å resolution

Z Su, K Zhang, K Kappel, S Li, MZ Palo, GD Pintilie… - Nature, 2021 - nature.com
Single-particle cryogenic electron microscopy (cryo-EM) has become a standard technique
for determining protein structures at atomic resolution,–. However, cryo-EM studies of protein …

Structures of the bacterial ribosome at 3.5 A resolution

BS Schuwirth, MA Borovinskaya, CW Hau, W Zhang… - Science, 2005 - science.org
We describe two structures of the intact bacterial ribosome from Escherichia coli determined
to a resolution of 3.5 angstroms by x-ray crystallography. These structures provide a detailed …

Understanding nucleic acid–ion interactions

J Lipfert, S Doniach, R Das… - Annual review of …, 2014 - annualreviews.org
Ions surround nucleic acids in what is referred to as an ion atmosphere. As a result, the
folding and dynamics of RNA and DNA and their complexes with proteins and with each …

The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks

SE Butcher, AM Pyle - Accounts of chemical research, 2011 - ACS Publications
RNA molecules adopt specific three-dimensional structures critical to their function. Many
essential metabolic processes, including protein synthesis and RNA splicing, are carried out …

Reversible unfolding of single RNA molecules by mechanical force

J Liphardt, B Onoa, SB Smith, I Tinoco Jr… - Science, 2001 - science.org
Here we use mechanical force to induce the unfolding and refolding of single RNA
molecules: a simple RNA hairpin, a molecule containing a three-helix junction, and the …

NMR spectroscopy of RNA

B Fürtig, C Richter, J Wöhnert, H Schwalbe - ChemBioChem, 2003 - Wiley Online Library
NMR spectroscopy is a powerful tool for studying proteins and nucleic acids in solution. This
is illustrated by the fact that nearly half of all current RNA structures were determined by …

Tertiary motifs in RNA structure and folding

RT Batey, RP Rambo… - Angewandte Chemie …, 1999 - Wiley Online Library
Specific tertiary structural motifs determine the complete architecture of RNA molecules (see
picture for examples). Within the last few years a number of high‐resolution crystal structures …

Ribozyme structures and mechanisms

EA Doherty, JA Doudna - Annual review of biochemistry, 2000 - annualreviews.org
▪ Abstract The past few years have seen exciting advances in understanding the structure
and function of catalytic RNA. Crystal structures of several ribozymes have provided detailed …