Epigenetic ageing clocks: statistical methods and emerging computational challenges

AE Teschendorff, S Horvath - Nature Reviews Genetics, 2025 - nature.com
Over the past decade, epigenetic clocks have emerged as powerful machine learning tools,
not only to estimate chronological and biological age but also to assess the efficacy of anti …

Challenges and perspectives in computational deconvolution of genomics data

LX Garmire, Y Li, Q Huang, C Xu, SA Teichmann… - Nature …, 2024 - nature.com
Deciphering cell-type heterogeneity is crucial for systematically understanding tissue
homeostasis and its dysregulation in diseases. Computational deconvolution is an efficient …

A DNA methylation atlas of normal human cell types

N Loyfer, J Magenheim, A Peretz, G Cann, J Bredno… - Nature, 2023 - nature.com
DNA methylation is a fundamental epigenetic mark that governs gene expression and
chromatin organization, thus providing a window into cellular identity and developmental …

A pan-tissue DNA methylation atlas enables in silico decomposition of human tissue methylomes at cell-type resolution

T Zhu, J Liu, S Beck, S Pan, D Capper, M Lechner… - Nature …, 2022 - nature.com
Bulk-tissue DNA methylomes represent an average over many different cell types,
hampering our understanding of cell-type-specific contributions to disease development. As …

Improved precision of epigenetic clock estimates across tissues and its implication for biological ageing

Q Zhang, CL Vallerga, RM Walker, T Lin, AK Henders… - Genome medicine, 2019 - Springer
Background DNA methylation changes with age. Chronological age predictors built from
DNA methylation are termed 'epigenetic clocks'. The deviation of predicted age from the …

Cigarette smoking and e-cigarette use induce shared DNA methylation changes linked to carcinogenesis

C Herzog, A Jones, I Evans, JR Raut, M Zikan… - Cancer …, 2024 - aacrjournals.org
Tobacco use is a major modifiable risk factor for adverse health outcomes, including cancer,
and elicits profound epigenetic changes thought to be associated with long-term cancer risk …

Identification of differentially methylated cell types in epigenome-wide association studies

SC Zheng, CE Breeze, S Beck, AE Teschendorff - Nature methods, 2018 - nature.com
An outstanding challenge of epigenome-wide association studies (EWASs) performed in
complex tissues is the identification of the specific cell type (s) responsible for the observed …

Deciphering the role of immune cell composition in epigenetic age acceleration: Insights from cell‐type deconvolution applied to human blood epigenetic clocks

Z Zhang, SR Reynolds, HG Stolrow, JQ Chen… - Aging …, 2024 - Wiley Online Library
Aging is a significant risk factor for various human disorders, and DNA methylation clocks
have emerged as powerful tools for estimating biological age and predicting health‐related …

A meta-analysis of immune-cell fractions at high resolution reveals novel associations with common phenotypes and health outcomes

Q Luo, VB Dwaraka, Q Chen, H Tong, T Zhu, K Seale… - Genome medicine, 2023 - Springer
Background Changes in cell-type composition of tissues are associated with a wide range of
diseases and environmental risk factors and may be causally implicated in disease …

A comparison of epigenetic mitotic-like clocks for cancer risk prediction

AE Teschendorff - Genome Medicine, 2020 - Springer
Background DNA methylation changes that accrue in the stem cell pool of an adult tissue in
line with the cumulative number of cell divisions may contribute to the observed variation in …