Phylogenomics
▪ Abstract The continuous flow of genomic data is creating unprecedented opportunities for
the reconstruction of molecular phylogenies. Access to whole-genome data means that …
the reconstruction of molecular phylogenies. Access to whole-genome data means that …
Troubleshooting molecular phylogenetic analyses
▪ Abstract The number, size, and scope of phylogenetic analyses using molecular data has
increased steadily in recent years. This has simultaneously led to a dramatic improvement in …
increased steadily in recent years. This has simultaneously led to a dramatic improvement in …
Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species
A molecular phylogenetic analysis of the Andean genus Tarasa (Malvaceae) and related
genera yielded unexpected results regarding generic boundaries, the origins of polyploidy …
genera yielded unexpected results regarding generic boundaries, the origins of polyploidy …
A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach
GH Sung, JM Sung, NL Hywel-Jones… - Molecular phylogenetics …, 2007 - Elsevier
Multi-gene phylogenetic analyses were conducted to address the evolution of
Clavicipitaceae (Ascomycota). Data are presented here for approximately 5900 base pairs …
Clavicipitaceae (Ascomycota). Data are presented here for approximately 5900 base pairs …
Phylogeny and diversification of the largest avian radiation
The order Passeriformes (“perching birds”) comprises extant species diversity comparable to
that of living mammals. For over a decade, a single phylogenetic hypothesis based on DNA …
that of living mammals. For over a decade, a single phylogenetic hypothesis based on DNA …
Mecoptera is paraphyletic: multiple genes and phylogeny of Mecoptera and Siphonaptera
MF Whiting - Zoologica scripta, 2002 - Wiley Online Library
Phylogenetic relationships among members of the Mecoptera and Siphonaptera were
inferred from DNA sequence data. Four loci (18S and 28S ribosomal DNA, cytochrome …
inferred from DNA sequence data. Four loci (18S and 28S ribosomal DNA, cytochrome …
Evolution of the chicken Toll-like receptor gene family: a story of gene gain and gene loss
Abstract Background Toll-like receptors (TLRs) perform a vital role in disease resistance
through their recognition of pathogen associated molecular patterns (PAMPs). Recent …
through their recognition of pathogen associated molecular patterns (PAMPs). Recent …
The utility of the incongruence length difference test
Conditional combination of phylogenetic data requires definition of explicit criteria for
combinability (Bull et al., 1993). In this con-text, combinability refers to the methodolog-ical …
combinability (Bull et al., 1993). In this con-text, combinability refers to the methodolog-ical …
Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and …
A combination of population genetics and phylogenetic inference methods was used to
delineate Bradyrhizobium species and to uncover the evolutionary forces acting at the …
delineate Bradyrhizobium species and to uncover the evolutionary forces acting at the …
A molecular phylogeny of the groupers of the subfamily Epinephelinae (Serranidae) with a revised classification of the Epinephelini
MT Craig, PA Hastings - Ichthyological Research, 2007 - Springer
The phylogenetic relationships among the fishes in the perciform tribe Epinephelini
(Serranidae) have long been poorly understood, in large part because of the numerous taxa …
(Serranidae) have long been poorly understood, in large part because of the numerous taxa …