High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer

S Salcher, G Sturm, L Horvath, G Untergasser… - Cancer cell, 2022 - cell.com
Non-small cell lung cancer (NSCLC) is characterized by molecular heterogeneity with
diverse immune cell infiltration patterns, which has been linked to therapy sensitivity and …

hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data

S Morabito, F Reese, N Rahimzadeh, E Miyoshi… - Cell reports …, 2023 - cell.com
Biological systems are immensely complex, organized into a multi-scale hierarchy of
functional units based on tightly regulated interactions between distinct molecules, cells …

[HTML][HTML] Remodeling of the immune and stromal cell compartment by PD-1 blockade in mismatch repair-deficient colorectal cancer

J Li, C Wu, H Hu, G Qin, X Wu, F Bai, J Zhang, Y Cai… - Cancer Cell, 2023 - cell.com
Immune checkpoint inhibitor (ICI) therapy can induce complete responses in mismatch
repair-deficient and microsatellite instability-high (d-MMR/MSI-H) colorectal cancers (CRCs) …

Selective advantage of mutant stem cells in human clonal hematopoiesis is associated with attenuated response to inflammation and aging

NA Jakobsen, S Turkalj, AGX Zeng, B Stoilova… - Cell Stem Cell, 2024 - cell.com
Clonal hematopoiesis (CH) arises when hematopoietic stem cells (HSCs) acquire mutations,
most frequently in the DNMT3A and TET2 genes, conferring a competitive advantage …

Map** human adult hippocampal neurogenesis with single-cell transcriptomics: reconciling controversy or fueling the debate?

G Tosoni, D Ayyildiz, J Bryois, W Macnair… - Neuron, 2023 - cell.com
The notion of exploiting the regenerative potential of the human brain in physiological aging
or neurological diseases represents a particularly attractive alternative to conventional …

Neuronal ambient RNA contamination causes misinterpreted and masked cell types in brain single-nuclei datasets

E Caglayan, Y Liu, G Konopka - Neuron, 2022 - cell.com
Ambient RNA contamination in single-cell and single-nuclei RNA sequencing (snRNA-seq)
is a significant problem, but its consequences are poorly understood. Here, we show that …

Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root

TM Nolan, N Vukašinović, CW Hsu, J Zhang… - Science, 2023 - science.org
Brassinosteroids are plant steroid hormones that regulate diverse processes, such as cell
division and cell elongation, through gene regulatory networks that vary in space and time …

Generating human neural diversity with a multiplexed morphogen screen in organoids

ND Amin, KW Kelley, K Kaganovsky, M Onesto, J Hao… - Cell Stem Cell, 2024 - cell.com
Morphogens choreograph the generation of remarkable cellular diversity in the develo**
nervous system. Differentiation of stem cells in vitro often relies upon the combinatorial …

Representing and extracting knowledge from single-cell data

IS Mihai, S Chafle, J Henriksson - Biophysical Reviews, 2024 - Springer
Single-cell analysis is currently one of the most high-resolution techniques to study biology.
The large complex datasets that have been generated have spurred numerous …

Neuronal identity defines α-synuclein and tau toxicity

R Praschberger, S Kuenen, N Schoovaerts, N Kaempf… - Neuron, 2023 - cell.com
Pathogenic α-synuclein and tau are critical drivers of neurodegeneration, and their
mutations cause neuronal loss in patients. Whether the underlying preferential neuronal …