Extracellular sheets and tunnels modulate glutamate diffusion in hippocampal neuropil

JP Kinney, J Spacek, TM Bartol… - Journal of …, 2013 - Wiley Online Library
Although the extracellular space in the neuropil of the brain is an important channel for
volume communication between cells and has other important functions, its morphology on …

VolRoverN: enhancing surface and volumetric reconstruction for realistic dynamical simulation of cellular and subcellular function

J Edwards, E Daniel, J Kinney, T Bartol, T Sejnowski… - Neuroinformatics, 2014 - Springer
Establishing meaningful relationships between cellular structure and function requires
accurate morphological reconstructions. In particular, there is an unmet need for high quality …

Method and apparatus for creating curved surface model

K Wang - US Patent 9,811,611, 2017 - Google Patents
A method and an apparatus for creating a curved surface model are provided, where the
method includes acquiring an already input section line of a target object; dividing three …

Quality multi-domain meshing for volumetric data

Q Zhang, B Subramanian, G Xu… - 2010 3rd International …, 2010 - ieeexplore.ieee.org
Multi-domain meshing from volumetric data is of great importance in many fields like
medicine, biology and geology. This paper proposes a new approach to produce a high …

[PDF][PDF] Reconstruction of 3d neuronal structures from densely packed electron microscopy data stacks

HF Yang - 2012 - core.ac.uk
The goal of fully decoding how the brain works requires a detailed wiring diagram of the
brain network that reveals the complete connectivity matrix. Recent advances in high …

Modeling algorithm for dynamic generalized body cavity

J Mo, H He, J Li, H Chen - Cogent Engineering, 2018 - Taylor & Francis
For the purpose of preoperative planning, this paper proposed a modeling algorithm for
automatically creating the dynamic model of the generalized body cavity. The algorithm …

[PDF][PDF] Fair Multi-Label Reconstruction from Cross-Sections

R Naamneh, G Barequet - 2013 - barequet.cs.technion.ac.il
In this thesis we propose an algorithm for reconstructing a multi-label object from cross-
sections in a fair manner. We handle the problem in its full generality: Crosssections need …

Analysis-ready models of tortuous, tightly packed geometries

JM Edwards - 2013 - repositories.lib.utexas.edu
Complex networks of cells called neurons in the brain enable human learning and memory.
The topology and electrophysiological function of these networks are affected by nano and …

[PDF][PDF] Form and Function: Multi-scale Modeling of Electrophysiology in the Hippocampus

C Bajaj - cemat.ist.utl.pt
Abstract Figure 1: Multiple scales of Neuron Electrophysiology Models. Black arrowheads
indicate synaptic input sites. Blue arrows indicate output sites. Understanding the …

[PDF][PDF] VolumeRoverN: Analysis-ready domain models of neuronal forests

UT CVC, J Edwards, E Daniel, C Bajaj - sci.utah.edu
The morphology and distribution of dendritic spines are correlated with disease, substance
abuse, and aging; but a quantitative understanding of this correlation has been elusive. A …