Enhancer redundancy in development and disease
Shadow enhancers are seemingly redundant transcriptional cis-regulatory elements that
regulate the same gene and drive overlap** expression patterns. Recent studies have …
regulate the same gene and drive overlap** expression patterns. Recent studies have …
Enhancer redundancy provides phenotypic robustness in mammalian development
Distant-acting tissue-specific enhancers, which regulate gene expression, vastly outnumber
protein-coding genes in mammalian genomes, but the functional importance of this …
protein-coding genes in mammalian genomes, but the functional importance of this …
Transcriptional Regulation and Implications for Controlling Hox Gene Expression
Z Afzal, R Krumlauf - Journal of Developmental Biology, 2022 - mdpi.com
Hox genes play key roles in axial patterning and regulating the regional identity of cells and
tissues in a wide variety of animals from invertebrates to vertebrates. Nested domains of Hox …
tissues in a wide variety of animals from invertebrates to vertebrates. Nested domains of Hox …
Decreased enhancer-promoter proximity accompanying enhancer activation
Enhancers can regulate the promoters of their target genes over very large genomic
distances. It is widely assumed that mechanisms of enhancer action involve the …
distances. It is widely assumed that mechanisms of enhancer action involve the …
Deep conservation of the enhancer regulatory code in animals
INTRODUCTION In animals, gene regulatory networks specify cell identity in space and
time. Transcription of genes in these networks is modulated by a class of cis-regulatory …
time. Transcription of genes in these networks is modulated by a class of cis-regulatory …
Yap controls notochord formation and neural tube patterning by integrating mechanotransduction with FoxA2 and Shh expression
Correct notochord and neural tube (NT) formation is crucial to the development of the central
nervous system and midline structures. Integrated biochemical and biophysical signaling …
nervous system and midline structures. Integrated biochemical and biophysical signaling …
Hemichordate cis-regulatory genomics and the gene expression dynamics of deuterostomes
A Pérez-Posada, CY Lin, TP Fan, CY Lin… - Nature Ecology & …, 2024 - nature.com
Deuterostomes are one major group of bilaterians composed by hemichordates and
echinoderms (collectively called Ambulacraria) and chordates. Comparative studies …
echinoderms (collectively called Ambulacraria) and chordates. Comparative studies …
Molecular regionalization of the develo** amphioxus neural tube challenges major partitions of the vertebrate brain
B Albuixech-Crespo, L López-Blanch, D Burguera… - PLoS …, 2017 - journals.plos.org
All vertebrate brains develop following a common Bauplan defined by anteroposterior (AP)
and dorsoventral (DV) subdivisions, characterized by largely conserved differential …
and dorsoventral (DV) subdivisions, characterized by largely conserved differential …
Topologically associated domains: a successful scaffold for the evolution of gene regulation in animals
RD Acemel, I Maeso… - Wiley Interdisciplinary …, 2017 - Wiley Online Library
The evolution of gene regulation is considered one of the main drivers causing the
astonishing morphological diversity in the animal kingdom. Gene regulation in animals …
astonishing morphological diversity in the animal kingdom. Gene regulation in animals …
Molecular characterization of nervous system organization in the hemichordate acorn worm Saccoglossus kowalevskii
Hemichordates are an important group for investigating the evolution of bilaterian nervous
systems. As the closest chordate outgroup with a bilaterally symmetric adult body plan …
systems. As the closest chordate outgroup with a bilaterally symmetric adult body plan …