Enhancer redundancy in development and disease

EZ Kvon, R Waymack, M Gad, Z Wunderlich - Nature Reviews Genetics, 2021 - nature.com
Shadow enhancers are seemingly redundant transcriptional cis-regulatory elements that
regulate the same gene and drive overlap** expression patterns. Recent studies have …

Enhancer redundancy provides phenotypic robustness in mammalian development

M Osterwalder, I Barozzi, V Tissières… - Nature, 2018 - nature.com
Distant-acting tissue-specific enhancers, which regulate gene expression, vastly outnumber
protein-coding genes in mammalian genomes, but the functional importance of this …

Transcriptional Regulation and Implications for Controlling Hox Gene Expression

Z Afzal, R Krumlauf - Journal of Developmental Biology, 2022 - mdpi.com
Hox genes play key roles in axial patterning and regulating the regional identity of cells and
tissues in a wide variety of animals from invertebrates to vertebrates. Nested domains of Hox …

Decreased enhancer-promoter proximity accompanying enhancer activation

NS Benabdallah, I Williamson, RS Illingworth, L Kane… - Molecular cell, 2019 - cell.com
Enhancers can regulate the promoters of their target genes over very large genomic
distances. It is widely assumed that mechanisms of enhancer action involve the …

Deep conservation of the enhancer regulatory code in animals

ES Wong, D Zheng, SZ Tan, NI Bower, V Garside… - Science, 2020 - science.org
INTRODUCTION In animals, gene regulatory networks specify cell identity in space and
time. Transcription of genes in these networks is modulated by a class of cis-regulatory …

Yap controls notochord formation and neural tube patterning by integrating mechanotransduction with FoxA2 and Shh expression

C Cheng, Q Cong, Y Liu, Y Hu, G Liang… - Science …, 2023 - science.org
Correct notochord and neural tube (NT) formation is crucial to the development of the central
nervous system and midline structures. Integrated biochemical and biophysical signaling …

Hemichordate cis-regulatory genomics and the gene expression dynamics of deuterostomes

A Pérez-Posada, CY Lin, TP Fan, CY Lin… - Nature Ecology & …, 2024 - nature.com
Deuterostomes are one major group of bilaterians composed by hemichordates and
echinoderms (collectively called Ambulacraria) and chordates. Comparative studies …

Molecular regionalization of the develo** amphioxus neural tube challenges major partitions of the vertebrate brain

B Albuixech-Crespo, L López-Blanch, D Burguera… - PLoS …, 2017 - journals.plos.org
All vertebrate brains develop following a common Bauplan defined by anteroposterior (AP)
and dorsoventral (DV) subdivisions, characterized by largely conserved differential …

Topologically associated domains: a successful scaffold for the evolution of gene regulation in animals

RD Acemel, I Maeso… - Wiley Interdisciplinary …, 2017 - Wiley Online Library
The evolution of gene regulation is considered one of the main drivers causing the
astonishing morphological diversity in the animal kingdom. Gene regulation in animals …

Molecular characterization of nervous system organization in the hemichordate acorn worm Saccoglossus kowalevskii

JM Andrade López, AM Pani, M Wu, J Gerhart… - Plos …, 2023 - journals.plos.org
Hemichordates are an important group for investigating the evolution of bilaterian nervous
systems. As the closest chordate outgroup with a bilaterally symmetric adult body plan …