Precision microbiome modulation with discrete dietary fiber structures directs short-chain fatty acid production

EC Deehan, C Yang, ME Perez-Muñoz, NK Nguyen… - Cell host & …, 2020 - cell.com
Dietary fibers (DFs) impact the gut microbiome in ways often considered beneficial.
However, it is unknown if precise and predictable manipulations of the gut microbiota, and …

Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing

RC Wilhelm, R Singh, LD Eltis, WW Mohn - The ISME Journal, 2019 - academic.oup.com
Delignification, or lignin-modification, facilitates the decomposition of lignocellulose in
woody plant biomass. The extant diversity of lignin-degrading bacteria and fungi is …

Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments

G Webster, LA O'Sullivan, Y Meng… - FEMS microbiology …, 2015 - academic.oup.com
Archaea are widespread in marine sediments, but their occurrence and relationship with
natural salinity gradients in estuarine sediments is not well understood. This study …

Diverse genomic traits differentiate sinking-particle-associated versus free-living microbes throughout the oligotrophic open ocean water column

AO Leu, JM Eppley, A Burger, EF DeLong - MBio, 2022 - Am Soc Microbiol
Bacteria and archaea are central to the production, consumption, and remineralization of
dissolved and particulate organic matter and contribute critically to carbon delivery, nutrient …

Chemolithotrophic processes in the bacterial communities on the surface of mineral-enriched biochars

J Ye, SD Joseph, M Ji, S Nielsen, DRG Mitchell… - The ISME …, 2017 - academic.oup.com
Biochar and mineral-enriched biochar (MEB) have been used as soil amendments to
improve soil fertility, sequester carbon and mitigate greenhouse gas emissions. Such …

Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses

P Yarza, W Ludwig, J Euzéby, R Amann… - Systematic and applied …, 2010 - Elsevier
The “All-Species Living Tree Project”(LTP) provides the scientific community with a useful
taxonomic tool consisting of a curated database of type strain sequences, a universal and …

Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis

A Gavriilidou, J Gutleben, D Versluis, F Forgiarini… - BMC genomics, 2020 - Springer
Background Members of the bacterial family Flavobacteriaceae are widely distributed in the
marine environment and often found associated with algae, fish, detritus or marine …

Unity in Variety—The Pan-Genome of the Chlamydiae

A Collingro, P Tischler, T Weinmaier… - Molecular biology …, 2011 - academic.oup.com
Chlamydiae are evolutionarily well-separated bacteria that live exclusively within eukaryotic
host cells. They include important human pathogens such as Chlamydia trachomatis as well …

[HTML][HTML] A taxonomic framework for cable bacteria and proposal of the candidate genera Electrothrix and Electronema

D Trojan, L Schreiber, JT Bjerg, A Bøggild… - Systematic and applied …, 2016 - Elsevier
Cable bacteria are long, multicellular filaments that can conduct electric currents over
centimeter-scale distances. All cable bacteria identified to date belong to the …

Morphology, ultrastructure, genomics, and phylogeny of Euplotes vanleeuwenhoeki sp. nov. and its ultra-reduced endosymbiont “Candidatus **uicoccus supinus” …

V Serra, L Gammuto, V Nitla, M Castelli, O Lanzoni… - Scientific reports, 2020 - nature.com
Taxonomy is the science of defining and naming groups of biological organisms based on
shared characteristics and, more recently, on evolutionary relationships. With the birth of …