[HTML][HTML] Biomedical text mining and its applications in cancer research

F Zhu, P Patumcharoenpol, C Zhang, Y Yang… - Journal of biomedical …, 2013 - Elsevier
Cancer is a malignant disease that has caused millions of human deaths. Its study has a
long history of well over 100years. There have been an enormous number of publications on …

Cross-type biomedical named entity recognition with deep multi-task learning

X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik… - …, 2019 - academic.oup.com
Motivation State-of-the-art biomedical named entity recognition (BioNER) systems often
require handcrafted features specific to each entity type, such as genes, chemicals and …

Combining literature text mining with microarray data: advances for system biology modeling

A Faro, D Giordano, C Spampinato - Briefings in bioinformatics, 2012 - academic.oup.com
A huge amount of important biomedical information is hidden in the bulk of research articles
in biomedical fields. At the same time, the publication of databases of biological information …

Using rule-based natural language processing to improve disease normalization in biomedical text

N Kang, B Singh, Z Afzal… - Journal of the …, 2013 - academic.oup.com
Background and objective In order for computers to extract useful information from
unstructured text, a concept normalization system is needed to link relevant concepts in a …

[PDF][PDF] Biomedical named entity recognition based on deep neutral network

L Yao, H Liu, Y Liu, X Li, MW Anwar - Int. J. Hybrid Inf. Technol, 2015 - gvpress.com
Many machine learning methods have been applied on the biomedical named entity
recognition and achieve good results on GENIA corpus. However most of those methods …

Managerial hubris detection: the case of Enron

E Eckhaus, Z Sheaffer - Risk Management, 2018 - Springer
Hubris is a known risk for leadership failure. We show that hubristic tendencies can be
detected semantically ex-ante in textual reports, and offer a novel methodology aimed at …

Biomedical text mining: state-of-the-art, open problems and future challenges

A Holzinger, J Schantl, M Schroettner, C Seifert… - … Discovery and Data …, 2014 - Springer
Text is a very important type of data within the biomedical domain. For example, patient
records contain large amounts of text which has been entered in a non-standardized format …

Knowledge-based extraction of adverse drug events from biomedical text

N Kang, B Singh, C Bui, Z Afzal, EM van Mulligen… - BMC …, 2014 - Springer
Background Many biomedical relation extraction systems are machine-learning based and
have to be trained on large annotated corpora that are expensive and cumbersome to …

A protein-protein interaction extraction approach based on deep neural network

Z Zhao, Z Yang, H Lin, J Wang… - International Journal of …, 2016 - inderscienceonline.com
Protein-Protein Interactions (PPIs) information extraction from biomedical literature helps
unveil the molecular mechanisms of biological processes. Machine learning methods have …

RENET2: high-performance full-text gene–disease relation extraction with iterative training data expansion

J Su, Y Wu, HF Ting, TW Lam… - NAR Genomics and …, 2021 - academic.oup.com
Relation extraction (RE) is a fundamental task for extracting gene–disease associations from
biomedical text. Many state-of-the-art tools have limited capacity, as they can extract gene …