[HTML][HTML] Decoding sex: Elucidating sex determination and how high-quality genome assemblies are untangling the evolutionary dynamics of sex chromosomes

L Ramos, A Antunes - Genomics, 2022 - Elsevier
Sexual reproduction is a diverse and widespread process. In gonochoristic species, the
differentiation of sexes occurs through diverse mechanisms, influenced by environmental …

Species-wide genomics of kākāpō provides tools to accelerate recovery

J Guhlin, MF Le Lec, J Wold, E Koot, D Winter… - Nature ecology & …, 2023 - nature.com
The kākāpō is a critically endangered, intensively managed, long-lived nocturnal parrot
endemic to Aotearoa New Zealand. We generated and analysed whole-genome sequence …

Runs of homozygosity reveal past bottlenecks and contemporary inbreeding across diverging populations of an Island‐colonizing bird

CA Martin, EC Sheppard, JC Illera, A Suh… - Molecular …, 2023 - Wiley Online Library
Genomes retain evidence of the demographic history and evolutionary forces that have
shaped populations and drive speciation. Across island systems, contemporary patterns of …

Genomic signatures of inbreeding depression for a threatened Aotearoa New Zealand passerine

L Duntsch, A Whibley, P de Villemereuil… - Molecular …, 2023 - Wiley Online Library
For small and isolated populations, the increased chance of mating between related
individuals can result in a substantial reduction in individual and population fitness. Despite …

Genoty**-by-Sequencing Strategy for Integrating Genomic Structure, Diversity and Performance of Various Japanese Quail (Coturnix japonica) Breeds

NA Volkova, MN Romanov, AS Abdelmanova… - Animals, 2023 - mdpi.com
Simple Summary Artificial selection has been applied to domesticated birds for many
decades. More recently, this selection has made use of so-called single-nucleotide …

Evolution and expression of the duck TRIM gene repertoire

LK Campbell, RM Peery, KE Magor - Frontiers in Immunology, 2023 - frontiersin.org
Tripartite motif (TRIM) proteins are involved in development, innate immunity, and viral
restriction. TRIM gene repertoires vary between species, likely due to diversification caused …

Genomes of Galápagos Mockingbirds Reveal the Impact of Island Size and Past Demography on Inbreeding and Genetic Load in Contemporary Populations

J Vlček, S Espinoza‐Ulloa, SA Cowles… - Molecular …, 2025 - Wiley Online Library
Restricted range size brings about noteworthy genetic consequences that may affect the
viability of a population and eventually its extinction. Particularly, the question if an increase …

An empirical evaluation of the estimation of inbreeding depression from molecular markers under suboptimal conditions

N Pérez‐Pereira, H Quesada… - Evolutionary …, 2023 - Wiley Online Library
Inbreeding depression (ID), the reduction in fitness due to inbreeding, is typically measured
by the regression of the phenotypic values of individuals for a particular trait on their …

Iterative Level-0: A new and fast algorithm to traverse mating networks calculating the inbreeding and relationship coefficients

M Menor-Flores, MA Vega-Rodríguez… - Computers in Biology and …, 2023 - Elsevier
In population medical genetics, the study of autosomal recessive disorders in highly
endogamous populations is a major topic where calculating the inbreeding and relationship …

Population genomics reveals moderate genetic differentiation between populations of endangered Forest Musk Deer located in Shaanxi and Sichuan

G Liu, BF Zhang, J Chang, XL Hu, C Li, TT Xu, SQ Liu… - BMC genomics, 2022 - Springer
Background Many endangered species exist in small, genetically depauperate, or inbred
populations, hence promoting genetic differentiation and reducing long-term population …