Towards a multi-omics of male infertility

AO Wagner, A Turk, T Kunej - The world journal of men's …, 2023 - pmc.ncbi.nlm.nih.gov
Infertility is a common problem affecting one in six couples and in 30% of infertile couples,
the male factor is a major cause. A large number of genes are involved in spermatogenesis …

Domestic chicken diversity: Origin, distribution, and adaptation

RA Lawal, O Hanotte - Animal Genetics, 2021 - Wiley Online Library
Chicken is the most numerous among the domesticated livestock species. Across cultures,
religions, and societies, chicken is widely accepted with little or no taboo compared to other …

A multi-tissue atlas of regulatory variants in cattle

S Liu, Y Gao, O Canela-Xandri, S Wang, Y Yu, W Cai… - Nature Genetics, 2022 - nature.com
Abstract Characterization of genetic regulatory variants acting on livestock gene expression
is essential for interpreting the molecular mechanisms underlying traits of economic value …

Bringing the animal QTLdb and CorrDB into the future: meeting new challenges and providing updated services

ZL Hu, CA Park, JM Reecy - Nucleic acids research, 2022 - academic.oup.com
Abstract The Animal QTLdb (https://www. animalgenome. org/QTLdb) and CorrDB
(https://www. animalgenome. org/CorrDB) are unique resources for livestock animal …

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

KA Shefchek, NL Harris, M Gargano… - Nucleic acids …, 2020 - academic.oup.com
In biology and biomedicine, relating phenotypic outcomes with genetic variation and
environmental factors remains a challenge: patient phenotypes may not match known …

Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary …

Y Zhou, L Yang, X Han, J Han, Y Hu, F Li, H **a… - Genome …, 2022 - genome.cshlp.org
A cattle pangenome representation was created based on the genome sequences of 898
cattle representing 57 breeds. The pangenome identified 83 Mb of sequence not found in …

Genomewide association analyses of lactation persistency and milk production traits in Holstein cattle based on imputed whole-genome sequence data

VB Pedrosa, FS Schenkel, SY Chen, HR Oliveira… - Genes, 2021 - mdpi.com
Lactation persistency and milk production are among the most economically important traits
in the dairy industry. In this study, we explored the association of over 6.1 million imputed …

[HTML][HTML] Genomic scans for selection signatures revealed candidate genes for adaptation and production traits in a variety of cattle breeds

KA Saravanan, M Panigrahi, H Kumar, S Parida… - Genomics, 2021 - Elsevier
Domestication and selection are the major driving forces responsible for the determinative
genetic variability in livestock. These selection patterns create unique genetic signatures …