Inflammaging and human longevity in the omics era

D Monti, R Ostan, V Borelli, G Castellani… - Mechanisms of Ageing …, 2017‏ - Elsevier
Inflammaging is a recent theory of aging originally proposed in 2000 where data and
conceptualizations regarding the aging of the immune system (immunosenescence) and the …

Identification of a DNA methylation signature in blood cells from persons with Down Syndrome

MG Bacalini, D Gentilini, A Boattini… - Aging (Albany …, 2014‏ - pmc.ncbi.nlm.nih.gov
Down Syndrome (DS) is characterized by a wide spectrum of clinical signs, which include
segmental premature aging of central nervous and immune systems. Although it is well …

Overcoming resistance to conventional drugs in Ewing sarcoma and identification of molecular predictors of outcome

K Scotlandi, D Remondini, G Castellani… - Journal of clinical …, 2009‏ - ascopubs.org
Purpose The improvement of Ewing sarcoma (EWS) therapy is currently linked to the
discovery of strategies to select patients with poor and good prognosis and of modified …

Stabilizing variable selection and regression

N Pfister, EG Williams, J Peters, R Aebersold… - The Annals of Applied …, 2021‏ - JSTOR
We consider regression in which one predicts a response 𝑌 with a set of predictors 𝑋 across
different experiments or environments. This is a common setup in many data-driven scientific …

Machine learning-based integrative analysis of methylome and transcriptome identifies novel prognostic DNA methylation signature in uveal melanoma

P Hou, S Bao, D Fan, C Yan, J Su, J Qu… - Briefings in …, 2021‏ - academic.oup.com
Uveal melanoma (UVM) is the most common primary intraocular human malignancy with a
high mortality rate. Aberrant DNA methylation has rapidly emerged as a diagnostic and …

Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains

ZP Liu, Y Wang, XS Zhang, L Chen - BMC systems biology, 2010‏ - Springer
Background Alzheimer's disease (AD) is a major neurodegenerative disorder leading to
amnesia, cognitive impairment and dementia in the elderly. Usually this type of lesions …

GraphPath: a graph attention model for molecular stratification with interpretability based on the pathway–pathway interaction network

T Ma, J Wang - Bioinformatics, 2024‏ - academic.oup.com
Motivation Studying the molecular heterogeneity of cancer is essential for achieving
personalized therapy. At the same time, understanding the biological processes that drive …

Harnessing network pharmacology in drug discovery: an integrated approach

CP Joshi, A Baldi, N Kumar, J Pradhan - Naunyn-Schmiedeberg's Archives …, 2024‏ - Springer
Traditional drug discovery approach is based on one drug-one target, that is associated with
very lengthy timelines, high costs and very low success rates. Network pharmacology (NP) is …

Identification of potential tissue-specific cancer biomarkers and development of cancer versus normal genomic classifiers

A Mohammed, G Biegert, J Adamec, T Helikar - Oncotarget, 2017‏ - pmc.ncbi.nlm.nih.gov
Machine learning techniques for cancer prediction and biomarker discovery can hasten
cancer detection and significantly improve prognosis. Recent “OMICS” studies which include …

Framework for classification of cancer gene expression data using Bayesian hyper-parameter optimization

N Koul, SS Manvi - Medical & Biological Engineering & Computing, 2021‏ - Springer
Computational classification of cancers is an important research problem. Gene expression
data has 1000s of features, very few samples, and a class imbalance problem. In this paper …