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Deep learning in proteomics
Proteomics, the study of all the proteins in biological systems, is becoming a data‐rich
science. Protein sequences and structures are comprehensively catalogued in online …
science. Protein sequences and structures are comprehensively catalogued in online …
Structure and function of TMEM16 proteins (anoctamins)
TMEM16 proteins, also known as anoctamins, are involved in a variety of functions that
include ion transport, phospholipid scrambling, and regulation of other membrane proteins …
include ion transport, phospholipid scrambling, and regulation of other membrane proteins …
Gut bacteria alleviate smoking-related NASH by degrading gut nicotine
Tobacco smoking is positively correlated with non-alcoholic fatty liver disease (NAFLD),,,–,
but the underlying mechanism for this association is unclear. Here we report that nicotine …
but the underlying mechanism for this association is unclear. Here we report that nicotine …
GPS 6.0: an updated server for prediction of kinase-specific phosphorylation sites in proteins
M Chen, W Zhang, Y Gou, D Xu, Y Wei… - Nucleic acids …, 2023 - academic.oup.com
Protein phosphorylation, catalyzed by protein kinases (PKs), is one of the most important
post-translational modifications (PTMs), and involved in regulating almost all of biological …
post-translational modifications (PTMs), and involved in regulating almost all of biological …
GPS 5.0: an update on the prediction of kinase-specific phosphorylation sites in proteins
In eukaryotes, protein phosphorylation is specifically catalyzed by numerous protein kinases
(PKs), faithfully orchestrates various biological processes, and reversibly determines cellular …
(PKs), faithfully orchestrates various biological processes, and reversibly determines cellular …
Metformin activates chaperone-mediated autophagy and improves disease pathologies in an Alzheimer disease mouse model
X Xu, Y Sun, X Cen, B Shan, Q Zhao, T **e… - Protein & …, 2021 - academic.oup.com
Chaperone-mediated autophagy (CMA) is a lysosome-dependent selective degradation
pathway implicated in the pathogenesis of cancer and neurodegenerative diseases …
pathway implicated in the pathogenesis of cancer and neurodegenerative diseases …
TFEB links autophagy to lysosomal biogenesis
Autophagy is a cellular catabolic process that relies on the cooperation of autophagosomes
and lysosomes. During starvation, the cell expands both compartments to enhance …
and lysosomes. During starvation, the cell expands both compartments to enhance …
Mitochondrial outer-membrane protein FUNDC1 mediates hypoxia-induced mitophagy in mammalian cells
Accumulating evidence has shown that dysfunctional mitochondria can be selectively
removed by mitophagy. Dysregulation of mitophagy is implicated in the development of …
removed by mitophagy. Dysregulation of mitophagy is implicated in the development of …
Akt-mediated regulation of autophagy and tumorigenesis through Beclin 1 phosphorylation
Aberrant signaling through the class I phosphatidylinositol 3-kinase (PI3K)–Akt axis is
frequent in human cancer. Here, we show that Beclin 1, an essential autophagy and tumor …
frequent in human cancer. Here, we show that Beclin 1, an essential autophagy and tumor …
DNA-PKcs interacts with and phosphorylates Fis1 to induce mitochondrial fragmentation in tubular cells during acute kidney injury
The catalytic subunit of DNA-dependent protein kinase (DNA-PKcs) regulates cell death. We
sought to determine whether DNA-PKcs played a role in the tubular damage that occurs …
sought to determine whether DNA-PKcs played a role in the tubular damage that occurs …