Recent advances in synthetic biology for engineering isoprenoid production in yeast

CE Vickers, TC Williams, B Peng, J Cherry - Current opinion in chemical …, 2017 - Elsevier
Highlights•Isoprenoids are industrially important natural products.•Yeast are key industrial
production vehicles.•New synthetic biology approaches in recent years are reviewed.•Future …

Design automation in synthetic biology

E Appleton, C Madsen, N Roehner… - Cold Spring Harbor …, 2017 - cshperspectives.cshlp.org
Design automation refers to a category of software tools for designing systems that work
together in a workflow for designing, building, testing, and analyzing systems with a target …

Microbial strain improvement by a HTP genomic engineering platform

Z Serber, EJ Dean, S Manchester, K Gora… - US Patent …, 2018 - Google Patents
2017-02-28 Assigned to Zymergen, Inc. reassignment Zymergen, Inc. ASSIGNMENT OF
ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: SHELLMAN, ERIN …

High-throughput functional variant screens via in vivo production of single-stranded DNA

MG Schubert, DB Goodman… - Proceedings of the …, 2021 - National Acad Sciences
Creating and characterizing individual genetic variants remains limited in scale, compared
to the tremendous variation both existing in nature and envisioned by genome engineers …

Sharing structure and function in biological design with SBOL 2.0

N Roehner, J Beal, K Clancy, B Bartley… - ACS synthetic …, 2016 - ACS Publications
The Synthetic Biology Open Language (SBOL) is a standard that enables collaborative
engineering of biological systems across different institutions and tools. SBOL is developed …

Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration

LBA Woodruff, TE Gorochowski… - Nucleic Acids …, 2017 - academic.oup.com
Genetic designs can consist of dozens of genes and hundreds of genetic parts. After
evaluating a design, it is desirable to implement changes without the cost and burden of …

Needs and opportunities in bio-design automation: four areas for focus

E Appleton, D Densmore, C Madsen… - Current Opinion in …, 2017 - Elsevier
Bio-design automation (BDA) is an emerging field focused on computer-aided design,
engineering principles, and automated manufacturing of biological systems. Here we …

An automated scientist to design and optimize microbial strains for the industrial production of small molecules

AH Singh, BB Kaufmann-Malaga, JA Lerman… - bioRxiv, 2023 - biorxiv.org
Engineering microbes to synthesize molecules of societal value has historically been a time
consuming and artisanal process, with the synthesis of each new non-native molecule …

Microbial strain improvement by a HTP genomic engineering platform

Z Serber, EJ Dean, S Manchester, K Gora… - US Patent …, 2019 - Google Patents
2018-04-05 Assigned to ZYMERGEN INC. reassignment ZYMERGEN INC. ASSIGNMENT
OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: SERBER, ZACH …

Microbial strain improvement by a HTP genomic engineering platform

Z Serber, EJ Dean, S Manchester, K Gora… - US Patent …, 2018 - Google Patents
2018-04-05 Assigned to ZYMERGEN INC. reassignment ZYMERGEN INC. ASSIGNMENT
OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: SERBER, ZACH …