Non-coding RNA regulatory networks

S Panni, RC Lovering, P Porras, S Orchard - Biochimica et biophysica acta …, 2020 - Elsevier
It is well established that the vast majority of human RNA transcripts do not encode for
proteins and that non-coding RNAs regulate cell physiology and shape cellular functions. A …

Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences

C Manzoni, DA Kia, J Vandrovcova… - Briefings in …, 2018 - academic.oup.com
Advances in the technologies and informatics used to generate and process large biological
data sets (omics data) are promoting a critical shift in the study of biomedical sciences. While …

The IntAct database: efficient access to fine-grained molecular interaction data

N Del Toro, A Shrivastava, E Ragueneau… - Nucleic acids …, 2022 - academic.oup.com
The IntAct molecular interaction database (https://www. ebi. ac. uk/intact) is a curated
resource of molecular interactions, derived from the scientific literature and from direct data …

The BioGRID interaction database: 2019 update

R Oughtred, C Stark, BJ Breitkreutz, J Rust… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Biological General Repository for Interaction Datasets (BioGRID:
https://thebiogrid. org) is an open access database dedicated to the curation and archival …

Pathway Commons 2019 Update: integration, analysis and exploration of pathway data

I Rodchenkov, O Babur, A Luna, BA Aksoy… - Nucleic acids …, 2020 - academic.oup.com
Abstract Pathway Commons (https://www. pathwaycommons. org) is an integrated resource
of publicly available information about biological pathways including biochemical reactions …

The BioGRID interaction database: 2017 update

A Chatr-Aryamontri, R Oughtred, L Boucher… - Nucleic acids …, 2017 - academic.oup.com
Abstract The Biological General Repository for Interaction Datasets (BioGRID:
https://thebiogrid. org) is an open access database dedicated to the annotation and archival …

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

S Orchard, M Ammari, B Aranda, L Breuza… - Nucleic acids …, 2014 - academic.oup.com
IntAct (freely available at http://www. ebi. ac. uk/intact) is an open-source, open data
molecular interaction database populated by data either curated from the literature or from …

The BioGRID interaction database: 2015 update

A Chatr-Aryamontri, BJ Breitkreutz… - Nucleic acids …, 2015 - academic.oup.com
Abstract The Biological General Repository for Interaction Datasets (BioGRID:
http://thebiogrid. org) is an open access database that houses genetic and protein …

ChEMBL: a large-scale bioactivity database for drug discovery

A Gaulton, LJ Bellis, AP Bento, J Chambers… - Nucleic acids …, 2012 - academic.oup.com
Abstract ChEMBL is an Open Data database containing binding, functional and ADMET
information for a large number of drug-like bioactive compounds. These data are manually …

InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation

K Breuer, AK Foroushani, MR Laird… - Nucleic acids …, 2013 - academic.oup.com
Abstract InnateDB (http://www. innatedb. com) is an integrated analysis platform that has
been specifically designed to facilitate systems-level analyses of mammalian innate …