Identification of tumor antigens with immunopeptidomics

C Chong, G Coukos, M Bassani-Sternberg - Nature Biotechnology, 2022 - nature.com
The identification of actionable tumor antigens is indispensable for the development of
several cancer immunotherapies, including T cell receptor–transduced T cells and patient …

Identification of small molecules using accurate mass MS/MS search

T Kind, H Tsugawa, T Cajka, Y Ma, Z Lai… - Mass spectrometry …, 2018 - Wiley Online Library
Tandem mass spectral library search (MS/MS) is the fastest way to correctly annotate MS/MS
spectra from screening small molecules in fields such as environmental analysis, drug …

[HTML][HTML] Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

LC Gillet, P Navarro, S Tate, H Röst, N Selevsek… - Molecular & Cellular …, 2012 - Elsevier
Most proteomic studies use liquid chromatography coupled to tandem mass spectrometry to
identify and quantify the peptides generated by the proteolysis of a biological sample …

A deeper look into Comet—implementation and features

JK Eng, MR Hoopmann, TA Jahan… - Journal of the …, 2015 - ACS Publications
The Comet database search software was initially released as an open source project in late
2012. Prior to that, Comet existed as the University of Washington's academic version of the …

A guide to mass spectrometric analysis of extracellular vesicle proteins for biomarker discovery

I Jalaludin, DM Lubman, J Kim - Mass Spectrometry Reviews, 2023 - Wiley Online Library
Exosomes (small extracellular vesicles) in living organisms play an important role in
processes such as cell proliferation or intercellular communication. Recently, exosomes …

Liquid chromatography mass spectrometry-based proteomics: biological and technological aspects

YV Karpievitch, AD Polpitiya… - The annals of …, 2010 - pmc.ncbi.nlm.nih.gov
Mass spectrometry-based proteomics has become the tool of choice for identifying and
quantifying the proteome of an organism. Though recent years have seen a tremendous …

A face in the crowd: recognizing peptides through database search

JK Eng, BC Searle, KR Clauser… - Molecular & Cellular …, 2011 - mcponline.org
Peptide identification via tandem mass spectrometry sequence database searching is a key
method in the array of tools available to the proteomics researcher. The ability to rapidly and …

Proteomic tools against the neglected pathology of snake bite envenoming

JJ Calvete - Expert review of proteomics, 2011 - Taylor & Francis
This article covers the application of proteomic tools ('venomics','antivenomics' and 'venom
phenoty**') to study the composition and natural history of snake venoms, and the cross …

Improving the efficacy of peptide vaccines in cancer immunotherapy

F Zahedipour, K Jamialahmadi, P Zamani… - International …, 2023 - Elsevier
Peptide vaccines have shown great potential in cancer immunotherapy by targeting tumor
antigens and activating the patient's immune system to mount a specific response against …

[KNJIGA][B] Handbook of molecular and cellular methods in biology and medicine

LJ Cseke, A Kirakosyan, PB Kaufman, MV Westfall - 2011 - books.google.com
Several milestones in biology have been achieved since the first publication of the
Handbook of Molecular and Cellular Methods in Biology and Medicine. This is true …