Spppred: Sequence-based protein-peptide binding residue prediction using genetic programming and ensemble learning

S Shafiee, A Fathi, G Taherzadeh - IEEE/ACM Transactions on …, 2022 - ieeexplore.ieee.org
Peptide-binding proteins play significant roles in various applications such as gene
expression, metabolism, signal transmission, DNA (Deoxyribose Nucleic Acid) repair, and …

Prediction of protein–peptide-binding amino acid residues regions using machine learning algorithms

S Shafiee, A Fathi - 2021 26th International Computer …, 2021 - ieeexplore.ieee.org
In bioinformatics, it remains challenging to predict important amino acid residues for the
binding amino acid residues regions and to perform binding region-based protein …

Combination of genetic programming and support vector machine-based prediction of protein-peptide binding sites with sequence and structure-based features

S Shafiee, A Fathi - Journal of Computing and Security, 2021 - jcomsec.ui.ac.ir
Prediction of the peptide-binding site of proteins is a significant and essential task in different
processes such as understanding biological processes, protein functional analysis …