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Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
New technologies have enabled the investigation of biology and human health at an
unprecedented scale and in multiple dimensions. These dimensions include a myriad of …
unprecedented scale and in multiple dimensions. These dimensions include a myriad of …
Transcriptional regulation by Polycomb group proteins
Polycomb group (PcG) proteins are epigenetic regulators of transcription that have key roles
in stem-cell identity, differentiation and disease. Mechanistically, they function within …
in stem-cell identity, differentiation and disease. Mechanistically, they function within …
Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks
The complex language of eukaryotic gene expression remains incompletely understood.
Despite the importance suggested by many noncoding variants statistically associated with …
Despite the importance suggested by many noncoding variants statistically associated with …
hnRNPK recruits PCGF3/5-PRC1 to the **st RNA B-repeat to establish polycomb-mediated chromosomal silencing
The Polycomb-repressive complexes PRC1 and PRC2 play a key role in chromosome
silencing induced by the non-coding RNA **st. Polycomb recruitment is initiated by the …
silencing induced by the non-coding RNA **st. Polycomb recruitment is initiated by the …
Competition between DNA methylation and transcription factors determines binding of NRF1
Eukaryotic transcription factors (TFs) are key determinants of gene activity, yet they bind only
a fraction of their corresponding DNA sequence motifs in any given cell type. Chromatin has …
a fraction of their corresponding DNA sequence motifs in any given cell type. Chromatin has …
Variant PRC1 complex-dependent H2A ubiquitylation drives PRC2 recruitment and polycomb domain formation
Chromatin modifying activities inherent to polycomb repressive complexes PRC1 and PRC2
play an essential role in gene regulation, cellular differentiation, and development. However …
play an essential role in gene regulation, cellular differentiation, and development. However …
A double take on bivalent promoters
Histone modifications and chromatin-associated protein complexes are crucially involved in
the control of gene expression, supervising cell fate decisions and differentiation. Many …
the control of gene expression, supervising cell fate decisions and differentiation. Many …
Mammalian SWI/SNF continuously restores local accessibility to chromatin
Chromatin accessibility is a hallmark of regulatory regions, entails transcription factor (TF)
binding and requires nucleosomal reorganization. However, it remains unclear how …
binding and requires nucleosomal reorganization. However, it remains unclear how …
CellNet: network biology applied to stem cell engineering
Somatic cell reprogramming, directed differentiation of pluripotent stem cells, and direct
conversions between differentiated cell lineages represent powerful approaches to engineer …
conversions between differentiated cell lineages represent powerful approaches to engineer …
Targeting Polycomb systems to regulate gene expression: modifications to a complex story
Polycomb group proteins are transcriptional repressors that are essential for normal gene
regulation during development. Recent studies suggest that Polycomb repressive …
regulation during development. Recent studies suggest that Polycomb repressive …