Weisfeiler and leman go loopy: A new hierarchy for graph representational learning

R Paolino, S Maskey, P Welke… - Advances in Neural …, 2025 - proceedings.neurips.cc
We introduce $ r $-loopy Weisfeiler-Leman ($ r $-$\ell $ WL), a novel hierarchy of graph
isomorphism tests and a corresponding GNN framework, $ r $-$\ell $ MPNN, that can count …

Graph positional encoding via random feature propagation

M Eliasof, F Frasca, B Bevilacqua… - International …, 2023 - proceedings.mlr.press
Two main families of node feature augmentation schemes have been explored for
enhancing GNNs: random features and spectral positional encoding. Surprisingly, however …

On the expressive power of spectral invariant graph neural networks

B Zhang, L Zhao, H Maron - arxiv preprint arxiv:2406.04336, 2024 - arxiv.org
Incorporating spectral information to enhance Graph Neural Networks (GNNs) has shown
promising results but raises a fundamental challenge due to the inherent ambiguity of …

Swallowing the bitter pill: Simplified scalable conformer generation

Y Wang, AA Elhag, N Jaitly, JM Susskind… - arxiv preprint arxiv …, 2023 - arxiv.org
We present a novel way to predict molecular conformers through a simple formulation that
sidesteps many of the heuristics of prior works and achieves state of the art results by using …

Generating molecular conformer fields

Y Wang, AAA Elhag, N Jaitly, JM Susskind, MA Bautista - 2023 - openreview.net
In this paper we tackle the problem of generating conformers of a molecule in 3D space
given its molecular graph. We parameterize these conformers as continuous functions that …

Manifold diffusion fields

AA Elhag, Y Wang, JM Susskind… - arxiv preprint arxiv …, 2023 - arxiv.org
We present Manifold Diffusion Fields (MDF), an approach that unlocks learning of diffusion
models of data in general non-Euclidean geometries. Leveraging insights from spectral …

Improving graph matching with positional reconstruction encoder-decoder network

Y Zhou, R Jia, H Lin, H Quan… - Advances in Neural …, 2023 - proceedings.neurips.cc
Deriving from image matching and understanding, semantic keypoint matching aims at
establishing correspondence between keypoint sets in images. As graphs are powerful tools …

Motif-driven molecular graph representation learning

R Wang, Y Ma, X Liu, Z **ng, Y Shen - Expert Systems with Applications, 2025 - Elsevier
Abstract Graph Neural Networks (GNNs) have emerged as powerful tools for molecular
graph analysis. Subgraph-based GNNs focus on learning high-level local patterns beyond …

Morphology generalizable reinforcement learning via multi-level graph features

Y Pan, R Zhang, J Guo, S Peng, F Wu, K Yuan, Y Gao… - Neurocomputing, 2025 - Elsevier
Controlling a group of robots with diverse morphologies using a unified policy, known as
morphology generalizable control, is a challenging problem in robotic control. Existing graph …

PGTransNet: a physics-guided transformer network for 3D ocean temperature and salinity predicting in tropical Pacific

S Wu, S Bao, W Dong, S Wang, X Zhang… - Frontiers in Marine …, 2024 - frontiersin.org
Accurately predicting the spatio-temporal evolution trends and long-term dynamics of three-
dimensional ocean temperature and salinity plays a crucial role in monitoring climate system …