Intermittent search strategies

O Bénichou, C Loverdo, M Moreau, R Voituriez - Reviews of Modern Physics, 2011 - APS
This review examines intermittent target search strategies, which combine phases of slow
motion, allowing the searcher to detect the target, and phases of fast motion during which …

Models of anomalous diffusion in crowded environments

IM Sokolov - Soft Matter, 2012 - pubs.rsc.org
A particle's motion in crowded environments often exhibits anomalous diffusion, whose
nature depends on the situation at hand and is formalized within different physical models …

Phase separation drives heterochromatin domain formation

AR Strom, AV Emelyanov, M Mir, DV Fyodorov… - Nature, 2017 - nature.com
Constitutive heterochromatin is an important component of eukaryotic genomes that has
essential roles in nuclear architecture, DNA repair and genome stability, and silencing of …

A general method to improve fluorophores for live-cell and single-molecule microscopy

JB Grimm, BP English, J Chen, JP Slaughter, Z Zhang… - Nature …, 2015 - nature.com
Specific labeling of biomolecules with bright fluorophores is the keystone of fluorescence
microscopy. Genetically encoded self-labeling tag proteins can be coupled to synthetic dyes …

Mouse heterochromatin adopts digital compaction states without showing hallmarks of HP1-driven liquid-liquid phase separation

F Erdel, A Rademacher, R Vlijm, J Tünnermann… - Molecular cell, 2020 - cell.com
The formation of silenced and condensed heterochromatin foci involves enrichment of
heterochromatin protein 1 (HP1). HP1 can bridge chromatin segments and form liquid …

The cytoplasm of living cells behaves as a poroelastic material

E Moeendarbary, L Valon, M Fritzsche, AR Harris… - Nature materials, 2013 - nature.com
The cytoplasm is the largest part of the cell by volume and hence its rheology sets the rate at
which cellular shape changes can occur. Recent experimental evidence suggests that …

Condensate interfacial forces reposition DNA loci and probe chromatin viscoelasticity

AR Strom, Y Kim, H Zhao, YC Chang, ND Orlovsky… - Cell, 2024 - cell.com
Biomolecular condensates assemble in living cells through phase separation and related
phase transitions. An underappreciated feature of these dynamic molecular assemblies is …

Single-molecule imaging of transcription factor binding to DNA in live mammalian cells

JCM Gebhardt, DM Suter, R Roy, ZW Zhao… - Nature …, 2013 - nature.com
Imaging single fluorescent proteins in living mammalian cells is challenged by out-of-focus
fluorescence excitation. To reduce out-of-focus fluorescence we developed reflected light …

Cancer cells' ability to mechanically adjust to extracellular matrix stiffness correlates with their invasive potential

L Wullkopf, AKV West, N Leijnse, TR Cox… - Molecular biology of …, 2018 - Am Soc Cell Biol
Increased tissue stiffness is a classic characteristic of solid tumors. One of the major
contributing factors is increased density of collagen fibers in the extracellular matrix (ECM) …

[HTML][HTML] Mechanisms of interplay between transcription factors and the 3D genome

S Kim, J Shendure - Molecular cell, 2019 - cell.com
Transcription factors (TFs) bind DNA in a sequence-specific manner and thereby serve as
the protein anchors and determinants of 3D genome organization. Conversely, chromatin …