An overview of deep learning in medical imaging focusing on MRI

AS Lundervold, A Lundervold - arxiv preprint arxiv:1811.10052, 2018 - arxiv.org
What has happened in machine learning lately, and what does it mean for the future of
medical image analysis? Machine learning has witnessed a tremendous amount of attention …

Deep convolutional neural networks for brain image analysis on magnetic resonance imaging: a review

J Bernal, K Kushibar, DS Asfaw, S Valverde… - Artificial intelligence in …, 2019 - Elsevier
In recent years, deep convolutional neural networks (CNNs) have shown record-shattering
performance in a variety of computer vision problems, such as visual object recognition …

Unetr: Transformers for 3d medical image segmentation

A Hatamizadeh, Y Tang, V Nath… - Proceedings of the …, 2022 - openaccess.thecvf.com
Abstract Fully Convolutional Neural Networks (FCNNs) with contracting and expanding
paths have shown prominence for the majority of medical image segmentation applications …

[HTML][HTML] TorchIO: a Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning

F Pérez-García, R Sparks, S Ourselin - Computer methods and programs in …, 2021 - Elsevier
Background and ObjectiveProcessing of medical images such as MRI or CT presents
different challenges compared to RGB images typically used in computer vision. These …

Recurrent residual convolutional neural network based on u-net (r2u-net) for medical image segmentation

MZ Alom, M Hasan, C Yakopcic, TM Taha… - arxiv preprint arxiv …, 2018 - arxiv.org
Deep learning (DL) based semantic segmentation methods have been providing state-of-the-
art performance in the last few years. More specifically, these techniques have been …

CA-Net: Comprehensive attention convolutional neural networks for explainable medical image segmentation

R Gu, G Wang, T Song, R Huang… - IEEE transactions on …, 2020 - ieeexplore.ieee.org
Accurate medical image segmentation is essential for diagnosis and treatment planning of
diseases. Convolutional Neural Networks (CNNs) have achieved state-of-the-art …

Cross-modality deep feature learning for brain tumor segmentation

D Zhang, G Huang, Q Zhang, J Han, J Han, Y Yu - Pattern Recognition, 2021 - Elsevier
Recent advances in machine learning and prevalence of digital medical images have
opened up an opportunity to address the challenging brain tumor segmentation (BTS) task …

Generalised dice overlap as a deep learning loss function for highly unbalanced segmentations

CH Sudre, W Li, T Vercauteren, S Ourselin… - Deep Learning in …, 2017 - Springer
Deep-learning has proved in recent years to be a powerful tool for image analysis and is
now widely used to segment both 2D and 3D medical images. Deep-learning segmentation …

[HTML][HTML] Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks

G Wang, W Li, M Aertsen, J Deprest, S Ourselin… - Neurocomputing, 2019 - Elsevier
Despite the state-of-the-art performance for medical image segmentation, deep
convolutional neural networks (CNNs) have rarely provided uncertainty estimations …

Interactive medical image segmentation using deep learning with image-specific fine tuning

G Wang, W Li, MA Zuluaga, R Pratt… - IEEE transactions on …, 2018 - ieeexplore.ieee.org
Convolutional neural networks (CNNs) have achieved state-of-the-art performance for
automatic medical image segmentation. However, they have not demonstrated sufficiently …