Metabolic burden: cornerstones in synthetic biology and metabolic engineering applications

G Wu, Q Yan, JA Jones, YJ Tang, SS Fong… - Trends in …, 2016 - cell.com
Engineering cell metabolism for bioproduction not only consumes building blocks and
energy molecules (eg, ATP) but also triggers energetic inefficiency inside the cell. The …

Metabolic engineering and synthetic biology for isoprenoid production in Escherichia coli and Saccharomyces cerevisiae

GR Navale, MS Dharne, SS Shinde - Applied Microbiology and …, 2021 - Springer
Isoprenoids, often called terpenoids, are the most abundant and highly diverse family of
natural organic compounds. In plants, they play a distinct role in the form of photosynthetic …

Towards a fully automated algorithm driven platform for biosystems design

M HamediRad, R Chao, S Weisberg, J Lian… - Nature …, 2019 - nature.com
Large-scale data acquisition and analysis are often required in the successful
implementation of the design, build, test, and learn (DBTL) cycle in biosystems design …

Rational design of a synthetic Entner–Doudoroff pathway for improved and controllable NADPH regeneration

CY Ng, I Farasat, CD Maranas, HM Salis - Metabolic engineering, 2015 - Elsevier
NADPH is an essential cofactor for the biosynthesis of several high-value chemicals,
including isoprenoids, fatty acid-based fuels, and biopolymers. Tunable control over all …

In vitro prototy** of limonene biosynthesis using cell-free protein synthesis

QM Dudley, AS Karim, CJ Nash, MC Jewett - Metabolic Engineering, 2020 - Elsevier
Metabolic engineering of microorganisms to produce sustainable chemicals has emerged
as an important part of the global bioeconomy. Unfortunately, efforts to design and engineer …

Redesigning regulatory components of quorum-sensing system for diverse metabolic control

C Ge, Z Yu, H Sheng, X Shen, X Sun, Y Zhang… - Nature …, 2022 - nature.com
Quorum sensing (QS) is a ubiquitous cell–cell communication mechanism that can be
employed to autonomously and dynamically control metabolic fluxes. However, since the …

Multidimensional heuristic process for high-yield production of astaxanthin and fragrance molecules in Escherichia coli

C Zhang, VY Seow, X Chen, HP Too - Nature Communications, 2018 - nature.com
Optimization of metabolic pathways consisting of large number of genes is challenging.
Multivariate modular methods (MMMs) are currently available solutions, in which reduced …

Flux Control at the Malonyl-CoA Node through Hierarchical Dynamic Pathway Regulation in Saccharomyces cerevisiae

F David, J Nielsen, V Siewers - ACS synthetic biology, 2016 - ACS Publications
The establishment of a heterologous pathway in a microbial host for the production of
industrially relevant chemicals at high titers and yields requires efficient adjustment of the …

CRISPR interference-guided balancing of a biosynthetic mevalonate pathway increases terpenoid production

SK Kim, GH Han, W Seong, H Kim, SW Kim, DH Lee… - Metabolic …, 2016 - Elsevier
Methods for simple and efficient regulation of metabolic pathway genes are essential for
maximizing product titers and conversion yields, and for minimizing the metabolic burden …

Towards efficient terpenoid biosynthesis: manipulating IPP and DMAPP supply

Q Wang, S Quan, H **ao - Bioresources and Bioprocessing, 2019 - Springer
Terpenoids are a group of largest natural products with important biological functions, and
their efficient biosynthesis is of particular importance to both academia and industry. As the …