Hidden symmetry of the flavivirus protein shell and pH-controlled reconstruction of the viral surface
Using recent Zika virus structural data we reveal a hidden symmetry of protein order in
immature and mature flavivirus shells, violating the Caspar–Klug paradigmatic model of …
immature and mature flavivirus shells, violating the Caspar–Klug paradigmatic model of …
Structural 3d domain reconstruction of the rna genome from viruses with secondary structure models
Three-dimensional RNA domain reconstruction is important for the assembly, disassembly
and delivery functionalities of a packed proteinaceus capsid. However, to date, the self …
and delivery functionalities of a packed proteinaceus capsid. However, to date, the self …
Scaling properties of RNA as a randomly branching polymer
Formation of base pairs between the nucleotides of a ribonucleic acid (RNA) sequence
gives rise to a complex and often highly branched RNA structure. While numerous studies …
gives rise to a complex and often highly branched RNA structure. While numerous studies …
Rna secondary structures regulate adsorption of fragments onto flat substrates
RNA is a functionally rich molecule with multilevel, hierarchical structures whose role in the
adsorption to molecular substrates is only beginning to be elucidated. Here, we introduce a …
adsorption to molecular substrates is only beginning to be elucidated. Here, we introduce a …
Integration of Cypoviruses into polyhedrin matrix
Unlike in other viruses, in Cypoviruses the genome is doubly protected since their
icosahedral capsids are embedded into a perfect polyhedrin crystal. Current experimental …
icosahedral capsids are embedded into a perfect polyhedrin crystal. Current experimental …
Molecular Dynamics Characterization of the Free and Encapsidated RNA2 of CCMV with the oxRNA Model
The cowpea chlorotic mottle virus (CCMV) has emerged as a model system to assess the
balance between electrostatic and topological features of single‐stranded RNA viruses …
balance between electrostatic and topological features of single‐stranded RNA viruses …
ANNaMo: Coarse-grained modeling for folding and assembly of RNA and DNA systems
The folding of RNA and DNA strands plays crucial roles in biological systems and
bionanotechnology. However, studying these processes with high-resolution numerical …
bionanotechnology. However, studying these processes with high-resolution numerical …
[BOK][B] Single-stranded RNA phages: From molecular biology to nanotechnology
P Pumpens - 2020 - taylorfrancis.com
This is a comprehensive guide to single-stranded RNA phages (family Leviviridae), first
discovered in 1961. These phages played a unique role in early studies of molecular …
discovered in 1961. These phages played a unique role in early studies of molecular …
Impact of the RNA Binding Domain Localization of the Protein Shell on Virus Particle Stability
The encapsulation of polyanions, whether single-stranded RNAs or synthetic polymers, is
primarily driven by attractive electrostatic interactions between the positively charged …
primarily driven by attractive electrostatic interactions between the positively charged …
nNxB: a new coarse-grained model for RNA and DNA nanotechnology
The folding processes of RNA and DNA play crucial roles in biological systems and
nanotechnology. However, studying these processes with high-resolution models is beyond …
nanotechnology. However, studying these processes with high-resolution models is beyond …