Interaction dynamics of intrinsically disordered proteins from single-molecule spectroscopy

A Chowdhury, D Nettels… - Annual review of …, 2023 - annualreviews.org
Many proteins contain large structurally disordered regions or are entirely disordered under
physiological conditions. The functions of these intrinsically disordered proteins (IDPs) often …

New Insights into the Cooperativity and Dynamics of Dimeric Enzymes

KW Chen, TY Sun, YD Wu - Chemical Reviews, 2023 - ACS Publications
A survey of protein databases indicates that the majority of enzymes exist in oligomeric
forms, with about half of those found in the UniProt database being homodimeric …

Fluorescence resonance energy transfer at the single-molecule level

T Ha, J Fei, S Schmid, NK Lee… - Nature Reviews …, 2024 - nature.com
Fluorescence resonance energy transfer (FRET) is a powerful spectroscopic method for
measuring distances in the 2–8 nm range. Often, conformational changes and molecular …

Heterogeneity in protein folding and unfolding reactions

S Bhatia, JB Udgaonkar - Chemical Reviews, 2022 - ACS Publications
Proteins have dynamic structures that undergo chain motions on time scales spanning from
picoseconds to seconds. Resolving the resultant conformational heterogeneity is essential …

FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices

E Lerner, A Barth, J Hendrix, B Ambrose, V Birkedal… - Elife, 2021 - elifesciences.org
Single-molecule FRET (smFRET) has become a mainstream technique for studying
biomolecular structural dynamics. The rapid and wide adoption of smFRET experiments by …

Unveiling invisible protein states with NMR spectroscopy

TR Alderson, LE Kay - Current opinion in structural biology, 2020 - Elsevier
Highlights•Sparsely populated protein states can play significant biological roles.•NMR
spectroscopy can structurally and dynamically characterize 'invisible'protein states.•We …

Single-molecule FRET for probing nanoscale biomolecular dynamics

D Nettels, N Galvanetto, MT Ivanović, M Nüesch… - Nature Reviews …, 2024 - nature.com
Single-molecule spectroscopy is a powerful method for studying the physics of molecular
systems, particularly biomolecules, such as proteins and nucleic acids. By avoiding …

Milestoning estimators of dissipation in systems observed at a coarse resolution

K Blom, K Song, E Vouga, A Godec… - Proceedings of the …, 2024 - National Acad Sciences
Many nonequilibrium, active processes are observed at a coarse-grained level, where
different microscopic configurations are projected onto the same observable state. Such …

Transition path times of coupled folding and binding reveal the formation of an encounter complex

F Sturzenegger, F Zosel, ED Holmstrom… - Nature …, 2018 - nature.com
The association of biomolecules is the elementary event of communication in biology. Most
mechanistic information of how the interactions between binding partners form or break is …

Robust membrane protein tweezers reveal the folding speed limit of helical membrane proteins

S Kim, D Lee, WCB Wijesinghe, D Min - Elife, 2023 - elifesciences.org
Single-molecule tweezers, such as magnetic tweezers, are powerful tools for probing nm-
scale structural changes in single membrane proteins under force. However, the weak …