[HTML][HTML] Data-analysis strategies for image-based cell profiling

JC Caicedo, S Cooper, F Heigwer, S Warchal, P Qiu… - Nature …, 2017 - nature.com
Image-based cell profiling is a high-throughput strategy for the quantification of phenotypic
differences among a variety of cell populations. It paves the way to studying biological …

Practical considerations for quantitative light sheet fluorescence microscopy

CM Hobson, M Guo, HD Vishwasrao, Y Wu, H Shroff… - Nature …, 2022 - nature.com
Fluorescence microscopy has evolved from a purely observational tool to a platform for
quantitative, hypothesis-driven research. As such, the demand for faster and less phototoxic …

A BaSiC tool for background and shading correction of optical microscopy images

T Peng, K Thorn, T Schroeder, L Wang, FJ Theis… - Nature …, 2017 - nature.com
Quantitative analysis of bioimaging data is often skewed by both shading in space and
background variation in time. We introduce BaSiC, an image correction method based on …

A review of methods for correction of intensity inhomogeneity in MRI

U Vovk, F Pernus, B Likar - IEEE transactions on medical …, 2007 - ieeexplore.ieee.org
Medical image acquisition devices provide a vast amount of anatomical and functional
information, which facilitate and improve diagnosis and patient treatment, especially when …

Retrospective correction of MR intensity inhomogeneity by information minimization

B Likar, MA Viergever, F Pernus - IEEE transactions on medical …, 2001 - ieeexplore.ieee.org
In this paper, the problem of retrospective correction of intensity inhomogeneity in magnetic
resonance (MR) images is addressed. A novel model-based correction method is proposed …

A review on MR image intensity inhomogeneity correction

Z Hou - International journal of biomedical imaging, 2006 - Wiley Online Library
Intensity inhomogeneity (IIH) is often encountered in MR imaging, and a number of
techniques have been devised to correct this artifact. This paper attempts to review some of …

A hierarchical approach to elastic registration based on mutual information

B Likar, F Pernuš - Image and vision computing, 2001 - Elsevier
A hierarchical approach to elastic registration based on mutual information, in which the
images are progressively subdivided, locally registered, and elastically interpolated, is …

Correction of uneven illumination (vignetting) in digital microscopy images

FJWM Leong, M Brady, JOD McGee - Journal of clinical pathology, 2003 - jcp.bmj.com
Background: Many digital microscopy images suffer from poor illumination at the peripheries
(vignetting), often attributable to factors related to the light path between the camera and the …

The role of bioinformatics in two‐dimensional gel electrophoresis

AW Dowsey, MJ Dunn, GZ Yang - PROTEOMICS: International …, 2003 - Wiley Online Library
Over the last two decades, two‐dimensional electrophoresis (2‐DE) gel has established
itself as the de facto approach to separating proteins from cell and tissue samples. Due to …

Pipeline for illumination correction of images for high‐throughput microscopy

S Singh, MA Bray, TR Jones… - Journal of …, 2014 - Wiley Online Library
The presence of systematic noise in images in high‐throughput microscopy experiments can
significantly impact the accuracy of downstream results. Among the most common sources of …